Wall clock time and date at job start Mon Mar 30 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99517 * 2 1 4 4 C 1.39667 * 119.99963 * 180.02562 * 2 1 3 5 5 C 1.38911 * 120.07710 * 359.97438 * 4 2 1 6 6 C 1.38103 * 119.92539 * 180.02562 * 5 4 2 7 7 C 1.38285 * 120.07368 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.92258 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47297 * 339.99706 * 8 7 6 10 10 N 1.46896 * 109.46985 * 219.99495 * 8 7 6 11 11 C 1.50698 * 109.47361 * 99.99787 * 8 7 6 12 12 H 1.08001 * 119.99909 * 5.58446 * 11 8 7 13 13 C 1.37874 * 120.00296 * 185.59452 * 11 8 7 14 14 N 1.31520 * 119.99957 * 194.82055 * 13 11 8 15 15 Si 1.86797 * 119.99943 * 14.81407 * 13 11 8 16 16 H 1.48501 * 109.47271 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47116 * 300.00439 * 15 13 11 18 18 H 1.48505 * 109.47005 * 60.00536 * 15 13 11 19 19 C 1.38278 * 120.15252 * 0.26633 * 7 6 5 20 20 C 1.38104 * 120.07407 * 359.45695 * 19 7 6 21 21 H 1.09009 * 109.46901 * 239.99518 * 1 2 3 22 22 H 1.08996 * 109.47494 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47574 * 119.99793 * 1 2 3 24 24 H 1.08989 * 109.47752 * 269.99896 * 3 2 1 25 25 H 1.09000 * 109.47201 * 30.01128 * 3 2 1 26 26 H 1.09004 * 109.46637 * 149.99947 * 3 2 1 27 27 H 1.07994 * 120.03914 * 0.02562 * 5 4 2 28 28 H 1.08002 * 119.95990 * 180.02562 * 6 5 4 29 29 H 1.00902 * 111.00351 * 179.14804 * 10 8 7 30 30 H 1.00902 * 111.00162 * 303.10956 * 10 8 7 31 31 H 0.96997 * 120.00103 * 354.89538 * 14 13 11 32 32 H 1.07998 * 119.96680 * 179.71023 * 19 7 6 33 33 H 1.08001 * 120.04179 * 180.27912 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4704 -2.4135 -0.0005 6 6 2.1641 -3.6077 -0.0005 7 6 3.5469 -3.6058 0.0000 8 6 4.3005 -4.9109 0.0006 9 1 3.6457 -5.7084 0.3520 10 7 5.4638 -4.8042 0.8911 11 6 4.7658 -5.2230 -1.3984 12 1 4.6181 -4.5031 -2.1898 13 6 5.3799 -6.4276 -1.6681 14 7 6.0415 -6.5912 -2.7929 15 14 5.2724 -7.8273 -0.4357 16 1 6.0110 -9.0048 -0.9584 17 1 5.8727 -7.3991 0.8533 18 1 3.8484 -8.1905 -0.2222 19 6 4.2399 -2.4092 0.0061 20 6 3.5525 -1.2114 0.0003 21 1 -0.3633 -0.5140 0.8900 22 1 -0.3634 1.0276 0.0005 23 1 -0.3634 -0.5138 -0.8900 24 1 2.3791 1.5835 -1.0275 25 1 1.6084 2.0283 0.5140 26 1 3.1498 1.1384 0.5139 27 1 0.3905 -2.4157 -0.0005 28 1 1.6259 -4.5440 -0.0010 29 1 5.9782 -5.6718 0.9196 30 1 6.0608 -4.0387 0.6161 31 1 6.0357 -5.8918 -3.4650 32 1 5.3199 -2.4112 0.0112 33 1 4.0943 -0.2771 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071500407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:53 Heat of formation + Delta-G solvation = 33.733013 kcal Electronic energy + Delta-G solvation = -14617.835169 eV Core-core repulsion = 12257.381833 eV Total energy + Delta-G solvation = -2360.453336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.14050 -36.45986 -34.11472 -31.70616 -30.59212 -29.02608 -27.96781 -25.89188 -24.21417 -21.80488 -21.30522 -19.32049 -17.60796 -17.02658 -15.61008 -15.02953 -14.89633 -14.30469 -13.86818 -13.49168 -13.07969 -12.87334 -12.77672 -12.57740 -12.17670 -12.02714 -11.78417 -11.71985 -11.50440 -10.63637 -10.24460 -10.07836 -9.90135 -9.26978 -9.17785 -8.43900 -8.25624 -7.50062 -6.83272 -6.34214 -4.16964 2.10175 2.32268 3.32356 3.37910 3.39926 3.56774 4.40673 4.58902 5.03432 5.14127 5.22429 5.32330 5.50166 5.50836 5.63758 5.70961 5.73341 5.84613 6.07419 6.18864 6.30547 6.37045 6.62779 6.73989 6.97167 7.20814 7.43573 7.57750 7.63899 7.90786 7.98564 8.27994 8.47385 8.58832 8.90495 9.55433 10.87071 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.051869 B = 0.006703 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.689494 B = 4176.115404 C = 4263.413805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.648 5.648 3 C 0.099 3.901 4 C 0.183 3.817 5 C -0.192 4.192 6 C -0.082 4.082 7 C -0.067 4.067 8 C 0.214 3.786 9 H 0.040 0.960 10 N -0.857 5.857 11 C -0.621 4.621 12 H 0.056 0.944 13 C 0.027 3.973 14 N -0.903 5.903 15 Si 1.050 2.950 16 H -0.285 1.285 17 H -0.273 1.273 18 H -0.282 1.282 19 C -0.067 4.067 20 C -0.195 4.195 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.329 0.671 30 H 0.323 0.677 31 H 0.268 0.732 32 H 0.116 0.884 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 11.654 6.512 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.363 5.363 3 C -0.044 4.044 4 C 0.085 3.915 5 C -0.214 4.214 6 C -0.101 4.101 7 C -0.069 4.069 8 C 0.105 3.895 9 H 0.057 0.943 10 N -0.388 5.388 11 C -0.661 4.661 12 H 0.074 0.926 13 C -0.178 4.178 14 N -0.537 5.537 15 Si 0.878 3.122 16 H -0.211 1.211 17 H -0.199 1.199 18 H -0.208 1.208 19 C -0.086 4.086 20 C -0.217 4.217 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.327 10.381 7.386 15.220 hybrid contribution -0.078 1.467 -1.439 2.056 sum -8.405 11.848 5.948 15.697 Atomic orbital electron populations 1.21459 0.80279 1.01460 1.00855 1.46108 1.04370 1.03088 1.82731 1.21531 0.97250 0.85092 1.00545 1.17638 0.91107 0.85163 0.97620 1.20472 0.98661 0.91228 1.11026 1.20751 0.93980 0.96773 0.98638 1.19879 0.93044 0.95726 0.98299 1.18234 0.89150 0.90284 0.91842 0.94257 1.59852 1.13038 1.09176 1.56735 1.22700 1.43554 1.04580 0.95257 0.92598 1.25872 0.92095 0.99437 1.00444 1.70847 1.35851 1.38392 1.08657 0.83932 0.77003 0.76116 0.75130 1.21109 1.19931 1.20839 1.20647 0.99349 0.91241 0.97319 1.20574 0.91934 0.98157 1.11026 0.93313 0.91613 0.93285 0.94116 0.92288 0.91525 0.87124 0.86701 0.85691 0.86508 0.92216 0.86650 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 9.40 59.85 0.56 1.69 16 2 N -0.65 -8.99 3.41 -187.55 -0.64 -9.63 16 3 C 0.10 1.09 10.16 59.85 0.61 1.70 16 4 C 0.18 3.16 6.55 -83.79 -0.55 2.61 16 5 C -0.19 -3.41 9.31 -39.38 -0.37 -3.78 16 6 C -0.08 -1.66 9.66 -39.61 -0.38 -2.04 16 7 C -0.07 -1.50 4.90 -104.59 -0.51 -2.01 16 8 C 0.21 5.22 2.48 -70.02 -0.17 5.05 16 9 H 0.04 0.98 6.71 -51.93 -0.35 0.63 16 10 N -0.86 -19.37 9.09 -6.65 -0.06 -19.43 16 11 C -0.62 -17.46 9.04 -34.44 -0.31 -17.77 16 12 H 0.06 1.73 7.99 -52.49 -0.42 1.32 16 13 C 0.03 0.78 5.41 -17.82 -0.10 0.68 16 14 N -0.90 -27.59 13.70 55.43 0.76 -26.83 16 15 Si 1.05 24.88 26.42 -169.99 -4.49 20.39 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.27 -5.91 5.62 56.52 0.32 -5.59 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.07 -1.36 9.27 -39.62 -0.37 -1.73 16 20 C -0.19 -3.50 9.21 -39.38 -0.36 -3.86 16 21 H 0.05 0.52 7.95 -51.92 -0.41 0.10 16 22 H 0.07 0.55 7.79 -51.93 -0.40 0.14 16 23 H 0.05 0.54 7.95 -51.93 -0.41 0.13 16 24 H 0.04 0.43 8.14 -51.94 -0.42 0.01 16 25 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 26 H 0.07 0.73 6.20 -51.93 -0.32 0.41 16 27 H 0.11 1.69 6.73 -52.49 -0.35 1.34 16 28 H 0.11 2.19 8.03 -52.49 -0.42 1.77 16 29 H 0.33 7.48 5.48 -39.29 -0.22 7.27 16 30 H 0.32 7.00 7.21 -39.29 -0.28 6.72 16 31 H 0.27 8.22 8.73 -40.82 -0.36 7.87 16 32 H 0.12 2.30 6.59 -52.49 -0.35 1.95 16 33 H 0.11 1.72 6.14 -52.49 -0.32 1.40 16 LS Contribution 267.40 15.07 4.03 4.03 Total: -1.00 -31.21 267.40 -6.69 -37.89 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -4.33 Total: 13.06 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.95 Total: -19.48 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.06 Total: -55.89 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.49 Total: 20.39 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.21 -6.69 -37.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.624 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds