Wall clock time and date at job start Mon Mar 30 2020 03:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86808 * 119.99726 * 2 1 4 4 H 1.48494 * 109.47039 * 240.00432 * 3 2 1 5 5 H 1.48501 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46631 * 120.00397 * 3 2 1 7 7 C 1.38847 * 120.00497 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00290 * 190.69358 * 7 2 1 9 9 N 1.37203 * 119.99769 * 10.97274 * 7 2 1 10 10 C 1.37002 * 125.09319 * 20.82837 * 9 7 2 11 11 C 1.34300 * 109.93413 * 179.81547 * 10 9 7 12 12 C 1.46675 * 107.05116 * 0.43429 * 11 10 9 13 13 C 1.39518 * 133.95086 * 179.73297 * 12 11 10 14 14 C 1.37889 * 119.63743 * 180.02562 * 13 12 11 15 15 Cl 1.73602 * 119.82652 * 180.02562 * 14 13 12 16 16 C 1.38847 * 120.34248 * 359.97438 * 14 13 12 17 17 C 1.37885 * 120.63145 * 0.08156 * 16 14 13 18 18 C 1.38138 * 125.09489 * 201.13726 * 9 7 2 19 19 H 0.96992 * 120.00026 * 359.97438 * 1 2 3 20 20 H 1.08005 * 125.03296 * 359.97438 * 10 9 7 21 21 H 1.08002 * 126.47791 * 180.13920 * 11 10 9 22 22 H 1.08002 * 120.17808 * 0.02562 * 13 12 11 23 23 H 1.07997 * 119.68492 * 180.02562 * 16 14 13 24 24 H 1.08004 * 120.02657 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6179 0.0000 4 1 3.1021 1.6966 -1.2125 5 1 1.2834 2.7465 0.0006 6 1 3.1022 1.6964 1.2125 7 6 2.0088 -1.2024 -0.0005 8 1 3.0747 -1.2106 0.1730 9 7 1.3417 -2.3797 -0.2272 10 6 0.1253 -2.4887 -0.8481 11 6 -0.2421 -3.7789 -0.9122 12 6 0.8206 -4.5610 -0.2715 13 6 1.0094 -5.9219 -0.0291 14 6 2.1512 -6.3476 0.6162 15 17 2.3915 -8.0399 0.9198 16 6 3.1103 -5.4299 1.0235 17 6 2.9360 -4.0819 0.7914 18 6 1.7929 -3.6320 0.1417 19 1 -0.4850 0.8400 0.0004 20 1 -0.4515 -1.6601 -1.2318 21 1 -1.1507 -4.1669 -1.3483 22 1 0.2653 -6.6380 -0.3452 23 1 4.0008 -5.7750 1.5277 24 1 3.6885 -3.3766 1.1121 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075233809.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:54 Heat of formation + Delta-G solvation = 30.964876 kcal Electronic energy + Delta-G solvation = -12191.731154 eV Core-core repulsion = 9902.482096 eV Total energy + Delta-G solvation = -2289.249058 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.85496 -38.27644 -36.81391 -34.99262 -32.81997 -30.39467 -29.46824 -26.74067 -23.47901 -22.32332 -21.74256 -19.49670 -17.59789 -17.15962 -16.55740 -16.23709 -15.35583 -15.02303 -14.76649 -13.96393 -13.80740 -13.57829 -13.31601 -12.99534 -12.68825 -12.60600 -12.21944 -12.04428 -11.68283 -11.46888 -11.03052 -10.43695 -8.87615 -8.78351 -8.47480 -6.28319 0.32737 0.73215 1.36292 1.38556 1.41827 1.50874 2.08174 2.19315 2.84828 2.98123 3.14982 4.00397 4.20587 4.51389 4.57010 4.65407 4.94444 5.12337 5.17826 5.26170 5.26964 5.51408 5.62392 5.71762 6.07461 6.27786 6.51929 7.06141 7.47989 8.39670 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.059497 B = 0.007403 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.497310 B = 3781.131230 C = 4200.709337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.001 3.999 3 Si 1.013 2.987 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.375 4.375 8 H 0.110 0.890 9 N -0.308 5.308 10 C 0.058 3.942 11 C -0.273 4.273 12 C -0.136 4.136 13 C -0.069 4.069 14 C -0.079 4.079 15 Cl -0.077 7.077 16 C -0.115 4.115 17 C -0.110 4.110 18 C 0.022 3.978 19 H 0.286 0.714 20 H 0.163 0.837 21 H 0.152 0.848 22 H 0.137 0.863 23 H 0.150 0.850 24 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 -5.234 0.376 6.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.204 4.204 3 Si 0.833 3.167 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.502 4.502 8 H 0.127 0.873 9 N 0.029 4.971 10 C -0.075 4.075 11 C -0.297 4.297 12 C -0.142 4.142 13 C -0.088 4.088 14 C -0.107 4.107 15 Cl -0.049 7.049 16 C -0.135 4.135 17 C -0.131 4.131 18 C -0.090 4.090 19 H 0.096 0.904 20 H 0.180 0.820 21 H 0.170 0.830 22 H 0.155 0.845 23 H 0.168 0.832 24 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.475 -4.880 0.456 6.008 hybrid contribution -0.002 0.758 0.036 0.759 sum 3.472 -4.122 0.493 5.412 Atomic orbital electron populations 1.69968 1.07711 1.30183 1.43510 1.26523 0.96566 1.03700 0.93623 0.84701 0.77736 0.74447 0.79790 1.18544 1.19529 1.18512 1.20194 0.94522 0.82978 1.52473 0.87272 1.40484 1.14955 1.04017 1.37648 1.22202 0.88821 0.97707 0.98817 1.21633 1.01840 0.91691 1.14575 1.19182 0.96468 0.92725 1.05843 1.20317 0.96634 0.93313 0.98541 1.20373 0.98112 0.84491 1.07758 1.98288 1.96926 1.14553 1.95097 1.20623 0.99655 0.90512 1.02743 1.20038 0.95967 0.95658 1.01412 1.18965 0.98765 0.85973 1.05273 0.90425 0.81985 0.83020 0.84477 0.83247 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.39 10.84 21.65 0.23 -45.15 14 2 C 0.00 0.06 5.35 84.90 0.45 0.51 14 3 Si 1.01 37.81 29.57 68.60 2.03 39.84 14 4 H -0.26 -9.42 7.11 99.48 0.71 -8.72 14 5 H -0.27 -9.73 7.11 99.48 0.71 -9.02 14 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 14 7 C -0.37 -19.54 9.93 84.00 0.83 -18.71 14 8 H 0.11 5.37 7.85 -2.91 -0.02 5.35 14 9 N -0.31 -16.30 2.92 -342.89 -1.00 -17.30 14 10 C 0.06 2.98 9.89 82.99 0.82 3.80 14 11 C -0.27 -12.60 11.09 23.57 0.26 -12.34 14 12 C -0.14 -6.24 6.37 -20.17 -0.13 -6.37 14 13 C -0.07 -2.67 9.87 22.50 0.22 -2.45 14 14 C -0.08 -2.84 6.32 22.33 0.14 -2.70 14 15 Cl -0.08 -2.26 28.94 -2.72 -0.08 -2.34 14 16 C -0.12 -4.12 9.80 22.33 0.22 -3.90 14 17 C -0.11 -4.62 9.94 22.36 0.22 -4.39 14 18 C 0.02 1.08 6.75 38.92 0.26 1.34 14 19 H 0.29 13.52 8.31 -92.71 -0.77 12.75 14 20 H 0.16 8.41 6.33 -2.91 -0.02 8.39 14 21 H 0.15 5.96 8.06 -2.91 -0.02 5.93 14 22 H 0.14 4.61 8.06 -2.91 -0.02 4.59 14 23 H 0.15 4.33 8.06 -2.91 -0.02 4.31 14 24 H 0.12 4.83 8.06 -2.91 -0.02 4.80 14 Total: -1.00 -56.14 233.62 5.71 -50.44 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 1.22 Total: 19.72 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 3.31 Total: -45.21 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.77 Total: -62.45 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.34 kcal Total: -56.14 5.71 -50.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075233809.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.401 kcal (2) G-P(sol) polarization free energy of solvation -56.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds