Wall clock time and date at job start Mon Mar 30 2020 03:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36651 * 125.59566 * 2 1 4 4 C 1.33976 * 108.05170 * 180.02562 * 3 2 1 5 5 C 1.41454 * 107.54533 * 359.84073 * 4 3 2 6 6 C 1.33975 * 107.54362 * 0.19875 * 5 4 3 7 7 C 1.50799 * 123.50575 * 180.25357 * 5 4 3 8 8 N 1.46898 * 109.76942 * 256.88802 * 7 5 4 9 9 C 1.50695 * 109.73030 * 136.22185 * 7 5 4 10 10 H 1.08004 * 120.00514 * 356.23551 * 9 7 5 11 11 C 1.37877 * 119.99719 * 176.23157 * 9 7 5 12 12 N 1.31512 * 120.00336 * 353.28612 * 11 9 7 13 13 Si 1.86803 * 119.99961 * 173.28050 * 11 9 7 14 14 H 1.48499 * 109.46958 * 180.02562 * 13 11 9 15 15 H 1.48496 * 109.47181 * 300.00328 * 13 11 9 16 16 H 1.48497 * 109.46976 * 60.00652 * 13 11 9 17 17 C 1.53421 * 108.11702 * 16.56659 * 7 5 4 18 18 C 1.53008 * 109.82627 * 309.35137 * 17 7 5 19 19 C 1.50797 * 128.95144 * 179.76499 * 4 3 2 20 20 H 1.08999 * 109.47003 * 90.02460 * 1 2 3 21 21 H 1.09005 * 109.47133 * 210.02370 * 1 2 3 22 22 H 1.08996 * 109.47262 * 330.02562 * 1 2 3 23 23 H 1.07999 * 125.97915 * 0.02562 * 3 2 1 24 24 H 1.08008 * 125.96908 * 179.84066 * 6 5 4 25 25 H 1.00903 * 111.00379 * 299.33167 * 8 7 5 26 26 H 1.00901 * 111.00209 * 63.28527 * 8 7 5 27 27 H 0.96995 * 120.00697 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.40851 * 69.45855 * 17 7 5 29 29 H 1.08996 * 109.40930 * 189.31335 * 17 7 5 30 30 H 1.08996 * 109.40930 * 192.04315 * 18 17 7 31 31 H 1.09003 * 109.40725 * 311.82766 * 18 17 7 32 32 H 1.09000 * 109.73121 * 77.00210 * 19 4 3 33 33 H 1.09001 * 109.76754 * 316.33738 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2605 1.1112 0.0000 4 6 3.5379 0.7073 -0.0006 5 6 3.5380 -0.7072 0.0028 6 6 2.2605 -1.1111 0.0009 7 6 4.7954 -1.5396 0.0089 8 7 5.0409 -2.0786 -1.3354 9 6 4.6511 -2.6721 0.9925 10 1 3.7639 -2.7467 1.6039 11 6 5.6517 -3.6131 1.1119 12 7 6.6694 -3.6002 0.2791 13 14 5.5619 -4.9064 2.4569 14 1 6.7505 -5.7924 2.3717 15 1 5.5360 -4.2398 3.7836 16 1 4.3281 -5.7146 2.2848 17 6 5.9633 -0.6366 0.4262 18 6 5.9636 0.6368 -0.4221 19 6 4.7953 1.5397 -0.0056 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5134 23 1 1.9191 2.1358 0.0004 24 1 1.9192 -2.1358 0.0001 25 1 4.2781 -2.6680 -1.6337 26 1 5.2046 -1.3359 -1.9985 27 1 7.3735 -4.2620 0.3633 28 1 5.8579 -0.3711 1.4781 29 1 6.9031 -1.1687 0.2793 30 1 6.9032 1.1694 -0.2756 31 1 5.8590 0.3712 -1.4741 32 1 4.9764 1.9389 0.9924 33 1 4.6920 2.3594 -0.7167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084349329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:31 Heat of formation + Delta-G solvation = 52.473617 kcal Electronic energy + Delta-G solvation = -15427.155654 eV Core-core repulsion = 13067.514972 eV Total energy + Delta-G solvation = -2359.640682 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.63401 -36.40252 -33.09974 -31.26357 -31.02215 -28.06063 -26.23719 -26.11174 -24.41447 -21.20380 -20.24691 -19.24247 -17.13929 -16.24206 -15.80584 -14.71198 -14.44248 -14.11274 -13.57153 -13.37231 -12.96549 -12.46909 -12.28582 -12.07627 -11.90557 -11.48609 -11.13233 -10.86377 -10.81073 -10.63248 -10.27858 -9.84482 -9.59136 -9.32915 -8.55425 -8.23324 -7.50697 -7.32697 -6.65759 -5.64708 -3.80670 2.97907 3.42557 3.47805 3.50694 3.58346 3.90388 4.61482 5.03330 5.35985 5.52134 5.54204 5.58602 5.82854 5.90930 6.00933 6.02990 6.39740 6.50825 6.67272 6.75864 6.79890 6.88234 6.96499 7.29696 7.48987 7.58531 7.84871 7.97364 8.07570 8.16072 8.22309 8.54500 8.89474 9.28202 9.43407 9.85505 11.33886 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028967 B = 0.011162 C = 0.009006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.373714 B = 2507.918321 C = 3108.204117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.471 5.471 3 C -0.034 4.034 4 C -0.167 4.167 5 C -0.149 4.149 6 C -0.014 4.014 7 C 0.313 3.687 8 N -0.795 5.795 9 C -0.522 4.522 10 H 0.050 0.950 11 C 0.084 3.916 12 N -0.837 5.837 13 Si 0.873 3.127 14 H -0.290 1.290 15 H -0.280 1.280 16 H -0.281 1.281 17 C -0.090 4.090 18 C -0.118 4.118 19 C -0.041 4.041 20 H 0.060 0.940 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.146 0.854 24 H 0.154 0.846 25 H 0.315 0.685 26 H 0.293 0.707 27 H 0.251 0.749 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 7.931 -1.628 11.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.151 5.151 3 C -0.161 4.161 4 C -0.175 4.175 5 C -0.157 4.157 6 C -0.141 4.141 7 C 0.221 3.779 8 N -0.320 5.320 9 C -0.561 4.561 10 H 0.068 0.932 11 C -0.122 4.122 12 N -0.471 5.471 13 Si 0.701 3.299 14 H -0.216 1.216 15 H -0.206 1.206 16 H -0.207 1.207 17 C -0.129 4.129 18 C -0.156 4.156 19 C -0.079 4.079 20 H 0.078 0.922 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.164 0.836 24 H 0.171 0.829 25 H 0.126 0.874 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.689 7.454 -1.366 10.796 hybrid contribution -1.171 -0.180 0.592 1.324 sum -8.860 7.275 -0.774 11.490 Atomic orbital electron populations 1.21778 0.78946 1.03246 1.01957 1.43962 1.04984 1.06223 1.59941 1.21022 0.90387 0.90604 1.14093 1.19564 0.92985 0.95181 1.09791 1.21202 0.96467 0.93624 1.04428 1.21349 0.90358 0.90456 1.11898 1.16904 0.84092 0.89240 0.87620 1.59253 1.47785 1.22235 1.02719 1.20835 1.04176 1.10014 1.21109 0.93225 1.24942 0.95833 0.96747 0.94690 1.70182 1.09652 1.33732 1.33560 0.87014 0.77134 0.82206 0.83527 1.21554 1.20599 1.20694 1.21510 1.02000 0.92683 0.96680 1.21675 0.95676 0.97672 1.00570 1.19988 0.92295 0.95934 0.99699 0.92163 0.90612 0.90961 0.83636 0.82859 0.87422 0.89608 0.93932 0.94135 0.90271 0.93851 0.92778 0.92482 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 11.12 59.85 0.67 1.65 16 2 N -0.47 -8.07 3.16 -124.83 -0.39 -8.46 16 3 C -0.03 -0.59 11.41 -16.90 -0.19 -0.78 16 4 C -0.17 -3.36 5.92 -104.85 -0.62 -3.98 16 5 C -0.15 -3.33 4.98 -104.85 -0.52 -3.85 16 6 C -0.01 -0.28 10.77 -16.90 -0.18 -0.46 16 7 C 0.31 7.74 0.57 -133.64 -0.08 7.67 16 8 N -0.79 -19.25 7.78 -0.92 -0.01 -19.25 16 9 C -0.52 -14.40 7.94 -34.44 -0.27 -14.68 16 10 H 0.05 1.39 7.49 -52.48 -0.39 1.00 16 11 C 0.08 2.34 5.23 -17.82 -0.09 2.25 16 12 N -0.84 -24.00 11.26 55.43 0.62 -23.37 16 13 Si 0.87 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C -0.09 -2.18 4.55 -26.51 -0.12 -2.30 16 18 C -0.12 -2.36 5.83 -26.51 -0.15 -2.51 16 19 C -0.04 -0.76 6.30 -27.62 -0.17 -0.93 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16 24 H 0.15 3.04 8.06 -52.48 -0.42 2.62 16 25 H 0.31 7.50 9.00 -39.29 -0.35 7.15 16 26 H 0.29 6.59 7.30 -39.29 -0.29 6.30 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 29 H 0.08 2.12 7.03 -51.93 -0.37 1.75 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 1.08 6.48 -51.93 -0.34 0.75 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 266.33 15.07 4.01 4.01 Total: -1.00 -30.38 266.33 -7.20 -37.58 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -4.67 Total: 10.94 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.74 Total: -17.92 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.22 Total: -51.09 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.38 -7.20 -37.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084349329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.057 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds