Wall clock time and date at job start Mon Mar 30 2020 03:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36651 * 125.59566 * 2 1 4 4 C 1.33976 * 108.05170 * 180.02562 * 3 2 1 5 5 C 1.41454 * 107.54533 * 359.84073 * 4 3 2 6 6 C 1.33975 * 107.54362 * 0.19875 * 5 4 3 7 7 C 1.50799 * 123.50575 * 180.25357 * 5 4 3 8 8 N 1.46898 * 109.76942 * 256.88802 * 7 5 4 9 9 C 1.50695 * 109.73030 * 136.22185 * 7 5 4 10 10 H 1.08004 * 120.00514 * 356.23551 * 9 7 5 11 11 C 1.37877 * 119.99719 * 176.23157 * 9 7 5 12 12 N 1.31512 * 120.00336 * 353.28612 * 11 9 7 13 13 Si 1.86803 * 119.99961 * 173.28050 * 11 9 7 14 14 H 1.48499 * 109.46958 * 180.02562 * 13 11 9 15 15 H 1.48496 * 109.47181 * 300.00328 * 13 11 9 16 16 H 1.48497 * 109.46976 * 60.00652 * 13 11 9 17 17 C 1.53421 * 108.11702 * 16.56659 * 7 5 4 18 18 C 1.53008 * 109.82627 * 309.35137 * 17 7 5 19 19 C 1.50797 * 128.95144 * 179.76499 * 4 3 2 20 20 H 1.08999 * 109.47003 * 90.02460 * 1 2 3 21 21 H 1.09005 * 109.47133 * 210.02370 * 1 2 3 22 22 H 1.08996 * 109.47262 * 330.02562 * 1 2 3 23 23 H 1.07999 * 125.97915 * 0.02562 * 3 2 1 24 24 H 1.08008 * 125.96908 * 179.84066 * 6 5 4 25 25 H 1.00903 * 111.00379 * 299.33167 * 8 7 5 26 26 H 1.00901 * 111.00209 * 63.28527 * 8 7 5 27 27 H 0.96995 * 120.00697 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.40851 * 69.45855 * 17 7 5 29 29 H 1.08996 * 109.40930 * 189.31335 * 17 7 5 30 30 H 1.08996 * 109.40930 * 192.04315 * 18 17 7 31 31 H 1.09003 * 109.40725 * 311.82766 * 18 17 7 32 32 H 1.09000 * 109.73121 * 77.00210 * 19 4 3 33 33 H 1.09001 * 109.76754 * 316.33738 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2605 1.1112 0.0000 4 6 3.5379 0.7073 -0.0006 5 6 3.5380 -0.7072 0.0028 6 6 2.2605 -1.1111 0.0009 7 6 4.7954 -1.5396 0.0089 8 7 5.0409 -2.0786 -1.3354 9 6 4.6511 -2.6721 0.9925 10 1 3.7639 -2.7467 1.6039 11 6 5.6517 -3.6131 1.1119 12 7 6.6694 -3.6002 0.2791 13 14 5.5619 -4.9064 2.4569 14 1 6.7505 -5.7924 2.3717 15 1 5.5360 -4.2398 3.7836 16 1 4.3281 -5.7146 2.2848 17 6 5.9633 -0.6366 0.4262 18 6 5.9636 0.6368 -0.4221 19 6 4.7953 1.5397 -0.0056 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5134 23 1 1.9191 2.1358 0.0004 24 1 1.9192 -2.1358 0.0001 25 1 4.2781 -2.6680 -1.6337 26 1 5.2046 -1.3359 -1.9985 27 1 7.3735 -4.2620 0.3633 28 1 5.8579 -0.3711 1.4781 29 1 6.9031 -1.1687 0.2793 30 1 6.9032 1.1694 -0.2756 31 1 5.8590 0.3712 -1.4741 32 1 4.9764 1.9389 0.9924 33 1 4.6920 2.3594 -0.7167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084349329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:31 Heat of formation + Delta-G solvation = 33.184253 kcal Electronic energy + Delta-G solvation = -15427.992104 eV Core-core repulsion = 13067.514972 eV Total energy + Delta-G solvation = -2360.477132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.08073 -38.09076 -34.87856 -33.00575 -32.57651 -29.74160 -27.98433 -27.55817 -26.16248 -22.79648 -21.91834 -20.75447 -18.76568 -18.04423 -17.46329 -16.38955 -15.98895 -15.85647 -15.14659 -14.79476 -14.57756 -14.20949 -13.84424 -13.44525 -13.24945 -13.06665 -12.79642 -12.69343 -12.55908 -12.36803 -12.07547 -11.82174 -11.36573 -11.11552 -10.53850 -10.31212 -9.07602 -8.78174 -8.45116 -7.76351 -5.98472 1.43566 1.45699 1.51649 1.58129 2.30215 2.36053 2.56010 3.39370 4.06895 4.32865 4.35101 4.38706 4.45412 4.51743 4.54493 4.68178 4.72540 5.01344 5.09248 5.14039 5.21198 5.25149 5.36224 5.63463 5.71707 5.86141 5.89546 6.08040 6.40439 6.50048 6.61614 6.82501 6.85762 7.31374 7.52974 7.71108 9.19398 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028967 B = 0.011162 C = 0.009006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.373714 B = 2507.918321 C = 3108.204117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.465 5.465 3 C -0.014 4.014 4 C -0.200 4.200 5 C -0.182 4.182 6 C -0.026 4.026 7 C 0.307 3.693 8 N -0.803 5.803 9 C -0.535 4.535 10 H 0.036 0.964 11 C 0.040 3.960 12 N -0.861 5.861 13 Si 0.929 3.071 14 H -0.287 1.287 15 H -0.280 1.280 16 H -0.277 1.277 17 C -0.083 4.083 18 C -0.111 4.111 19 C -0.035 4.035 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.188 0.812 24 H 0.148 0.852 25 H 0.313 0.687 26 H 0.302 0.698 27 H 0.248 0.752 28 H 0.020 0.980 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.941 9.611 -1.632 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.143 5.143 3 C -0.143 4.143 4 C -0.208 4.208 5 C -0.191 4.191 6 C -0.155 4.155 7 C 0.216 3.784 8 N -0.328 5.328 9 C -0.574 4.574 10 H 0.054 0.946 11 C -0.163 4.163 12 N -0.497 5.497 13 Si 0.756 3.244 14 H -0.213 1.213 15 H -0.206 1.206 16 H -0.202 1.202 17 C -0.122 4.122 18 C -0.148 4.148 19 C -0.072 4.072 20 H 0.097 0.903 21 H 0.101 0.899 22 H 0.119 0.881 23 H 0.205 0.795 24 H 0.165 0.835 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.497 9.140 -1.364 13.251 hybrid contribution -0.703 -0.688 0.596 1.150 sum -10.200 8.452 -0.769 13.269 Atomic orbital electron populations 1.22149 0.75556 1.05094 1.03782 1.44229 1.07003 1.05043 1.58033 1.21584 0.89515 0.92199 1.11015 1.19825 0.94902 0.94232 1.11839 1.21006 0.96122 0.94943 1.07035 1.21256 0.90620 0.91289 1.12363 1.16777 0.85840 0.88888 0.86924 1.59145 1.47912 1.22826 1.02965 1.21138 1.03552 1.11153 1.21582 0.94601 1.25537 0.95707 0.98595 0.96495 1.70312 1.10102 1.34347 1.34890 0.86113 0.77155 0.80055 0.81038 1.21258 1.20632 1.20220 1.21326 1.00064 0.94538 0.96295 1.21564 0.97772 0.96168 0.99333 1.19959 0.90573 0.95956 1.00725 0.90287 0.89909 0.88110 0.79532 0.83495 0.87650 0.88672 0.94292 0.96155 0.93809 0.92146 0.93091 0.92071 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.47 11.12 127.77 1.42 2.89 16 2 N -0.47 -14.59 3.16 -548.85 -1.74 -16.32 16 3 C -0.01 -0.44 11.41 82.97 0.95 0.50 16 4 C -0.20 -7.66 5.92 -20.01 -0.12 -7.78 16 5 C -0.18 -8.12 4.98 -20.01 -0.10 -8.22 16 6 C -0.03 -1.06 10.77 82.97 0.89 -0.17 16 7 C 0.31 15.54 0.57 2.21 0.00 15.54 16 8 N -0.80 -39.84 7.78 -156.83 -1.22 -41.06 16 9 C -0.54 -30.34 7.94 25.60 0.20 -30.14 16 10 H 0.04 2.07 7.49 -2.91 -0.02 2.05 16 11 C 0.04 2.30 5.23 84.65 0.44 2.74 16 12 N -0.86 -50.74 11.26 21.45 0.24 -50.49 16 13 Si 0.93 45.06 29.54 68.60 2.03 47.08 16 14 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 15 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 17 C -0.08 -4.13 4.55 30.74 0.14 -3.99 16 18 C -0.11 -4.34 5.83 30.74 0.18 -4.16 16 19 C -0.03 -1.18 6.30 30.02 0.19 -0.99 16 20 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 22 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.19 4.25 8.06 -2.91 -0.02 4.22 16 24 H 0.15 5.91 8.06 -2.91 -0.02 5.89 16 25 H 0.31 15.34 9.00 -89.69 -0.81 14.54 16 26 H 0.30 13.81 7.30 -89.69 -0.66 13.16 16 27 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 29 H 0.04 2.42 7.03 -2.39 -0.02 2.41 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.05 2.01 6.48 -2.39 -0.02 1.99 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -66.68 266.33 3.16 -63.52 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.35 Total: 31.05 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.20 Total: -33.77 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -2.71 Total: -107.88 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -66.68 3.16 -63.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084349329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.700 kcal (2) G-P(sol) polarization free energy of solvation -66.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds