Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86806 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47019 * 269.99681 * 3 2 1 5 5 H 1.48497 * 109.46959 * 29.99447 * 3 2 1 6 6 H 1.48492 * 109.47192 * 149.99422 * 3 2 1 7 7 C 1.38621 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00087 * 0.02562 * 7 2 1 9 9 O 1.34800 * 120.00392 * 180.02562 * 7 2 1 10 10 C 1.35676 * 117.00250 * 185.06321 * 9 7 2 11 11 C 1.37950 * 119.91931 * 354.36409 * 10 9 7 12 12 C 1.38596 * 120.54630 * 180.02562 * 11 10 9 13 13 C 1.37751 * 120.15248 * 0.02562 * 12 11 10 14 14 C 1.39383 * 120.24949 * 359.95835 * 13 12 11 15 15 S 1.76115 * 131.63409 * 180.02562 * 14 13 12 16 16 C 1.70651 * 90.82046 * 179.97438 * 15 14 13 17 17 N 1.27932 * 111.49609 * 0.02562 * 16 15 14 18 18 C 1.34596 * 117.85010 * 359.97438 * 17 16 15 19 19 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.72274 * 0.04103 * 11 10 9 21 21 H 1.07998 * 119.92746 * 180.02562 * 12 11 10 22 22 H 1.08005 * 119.87642 * 180.02562 * 13 12 11 23 23 H 1.08003 * 124.25130 * 179.72969 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4403 0.7001 7 6 2.0089 -1.2005 0.0005 8 1 1.4689 -2.1358 0.0005 9 8 3.3569 -1.2005 0.0011 10 6 3.9729 -2.4047 -0.1051 11 6 3.2251 -3.5638 -0.0900 12 6 3.8410 -4.8008 -0.1970 13 6 5.2105 -4.8836 -0.3194 14 6 5.9852 -3.7251 -0.3373 15 16 7.7238 -3.4822 -0.4784 16 6 7.5195 -1.7903 -0.3888 17 7 6.2861 -1.4729 -0.2674 18 6 5.3812 -2.4686 -0.2309 19 1 -0.4850 0.8400 -0.0004 20 1 2.1509 -3.5068 0.0059 21 1 3.2458 -5.7019 -0.1845 22 1 5.6858 -5.8499 -0.4030 23 1 8.3300 -1.0774 -0.4249 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089195214.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = 32.169457 kcal Electronic energy + Delta-G solvation = -12228.393135 eV Core-core repulsion = 9941.240018 eV Total energy + Delta-G solvation = -2287.153117 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.95489 -37.92118 -35.70035 -32.62064 -29.51555 -29.15044 -25.49859 -24.40657 -21.84603 -21.07126 -18.46637 -18.05682 -16.29770 -15.76172 -15.05395 -14.65761 -14.59511 -13.96728 -13.52512 -13.28785 -12.56934 -12.44060 -11.94282 -11.44015 -11.21153 -10.88210 -10.69746 -10.32658 -9.66101 -9.36152 -9.14641 -8.84586 -8.23269 -7.11214 -6.62957 -4.25504 1.02943 1.75542 1.87372 2.18192 2.95066 3.16107 3.20964 3.39489 4.13409 4.26936 4.48747 4.63695 4.92508 5.36290 5.53100 5.69396 5.96105 6.09410 6.22513 6.66671 6.79591 7.04079 7.28198 7.51682 7.78014 8.17594 8.70334 9.31470 10.42101 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.039361 B = 0.009597 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.187042 B = 2916.767366 C = 3615.849486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.391 4.391 8 H 0.114 0.886 9 O -0.181 6.181 10 C 0.210 3.790 11 C -0.237 4.237 12 C -0.035 4.035 13 C -0.180 4.180 14 C -0.112 4.112 15 S 0.040 5.960 16 C 0.017 3.983 17 N -0.427 5.427 18 C 0.006 3.994 19 H 0.284 0.716 20 H 0.146 0.854 21 H 0.125 0.875 22 H 0.117 0.883 23 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.369 -6.072 -0.670 12.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.136 4.136 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.466 4.466 8 H 0.131 0.869 9 O -0.082 6.082 10 C 0.151 3.849 11 C -0.260 4.260 12 C -0.056 4.056 13 C -0.205 4.205 14 C -0.230 4.230 15 S 0.292 5.708 16 C -0.288 4.288 17 N -0.138 5.138 18 C -0.114 4.114 19 H 0.095 0.905 20 H 0.163 0.837 21 H 0.143 0.857 22 H 0.135 0.865 23 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 10.978 -5.612 -0.705 12.349 hybrid contribution -0.699 0.833 0.063 1.089 sum 10.280 -4.778 -0.642 11.354 Atomic orbital electron populations 1.69644 1.05687 1.29179 1.45160 1.24526 0.95073 0.99251 0.94781 0.86168 0.80685 0.80772 0.79503 1.19524 1.20473 1.17634 1.20946 0.76599 0.97096 1.51958 0.86927 1.83611 1.22768 1.25718 1.76107 1.18468 0.87593 0.86091 0.92733 1.20976 1.01428 0.90986 1.12592 1.20793 0.93334 0.97048 0.94441 1.19792 0.93189 0.94987 1.12527 1.23320 0.95483 0.97769 1.06431 1.83499 1.03685 1.07282 1.76377 1.27586 0.96633 0.97026 1.07518 1.65956 1.00686 1.35411 1.11726 1.18168 0.92132 0.86731 1.14333 0.90534 0.83697 0.85728 0.86470 0.79053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.00 13.96 55.48 0.77 -23.23 14 2 C 0.07 1.92 5.49 -17.52 -0.10 1.82 14 3 Si 0.90 21.70 28.62 -169.99 -4.86 16.83 14 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 14 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 6 H -0.25 -6.29 7.11 56.52 0.40 -5.89 14 7 C -0.39 -10.78 9.94 30.87 0.31 -10.47 14 8 H 0.11 3.08 5.41 -52.48 -0.28 2.80 14 9 O -0.18 -4.88 8.59 0.36 0.00 -4.88 14 10 C 0.21 5.03 6.71 -38.43 -0.26 4.77 14 11 C -0.24 -4.97 9.13 -39.55 -0.36 -5.33 14 12 C -0.03 -0.60 10.03 -39.63 -0.40 -1.00 14 13 C -0.18 -3.06 10.06 -39.33 -0.40 -3.45 14 14 C -0.11 -2.11 6.55 -38.56 -0.25 -2.37 14 15 S 0.04 0.61 23.17 -107.50 -2.49 -1.88 14 16 C 0.02 0.29 12.10 51.14 0.62 0.90 14 17 N -0.43 -9.18 10.56 -12.85 -0.14 -9.31 14 18 C 0.01 0.13 6.94 -84.81 -0.59 -0.46 14 19 H 0.28 7.29 8.31 -40.82 -0.34 6.95 14 20 H 0.15 3.07 5.57 -52.49 -0.29 2.77 14 21 H 0.12 1.69 8.06 -52.49 -0.42 1.26 14 22 H 0.12 1.64 8.06 -52.48 -0.42 1.21 14 23 H 0.19 2.33 8.06 -52.48 -0.42 1.90 14 LS Contribution 226.65 15.07 3.42 3.42 Total: -1.00 -29.87 226.65 -5.70 -35.58 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -0.98 Total: -0.95 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.42 Total: -15.58 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.64 Total: -32.54 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.00 Total: -4.88 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.83 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.49 Total: -1.88 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -29.87 -5.70 -35.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089195214.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.745 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds