Wall clock time and date at job start Mon Mar 30 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86806 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47019 * 269.99681 * 3 2 1 5 5 H 1.48497 * 109.46959 * 29.99447 * 3 2 1 6 6 H 1.48492 * 109.47192 * 149.99422 * 3 2 1 7 7 C 1.38621 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00087 * 0.02562 * 7 2 1 9 9 O 1.34800 * 120.00392 * 180.02562 * 7 2 1 10 10 C 1.35676 * 117.00250 * 185.06321 * 9 7 2 11 11 C 1.37950 * 119.91931 * 354.36409 * 10 9 7 12 12 C 1.38596 * 120.54630 * 180.02562 * 11 10 9 13 13 C 1.37751 * 120.15248 * 0.02562 * 12 11 10 14 14 C 1.39383 * 120.24949 * 359.95835 * 13 12 11 15 15 S 1.76115 * 131.63409 * 180.02562 * 14 13 12 16 16 C 1.70651 * 90.82046 * 179.97438 * 15 14 13 17 17 N 1.27932 * 111.49609 * 0.02562 * 16 15 14 18 18 C 1.34596 * 117.85010 * 359.97438 * 17 16 15 19 19 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.72274 * 0.04103 * 11 10 9 21 21 H 1.07998 * 119.92746 * 180.02562 * 12 11 10 22 22 H 1.08005 * 119.87642 * 180.02562 * 13 12 11 23 23 H 1.08003 * 124.25130 * 179.72969 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4403 0.7001 7 6 2.0089 -1.2005 0.0005 8 1 1.4689 -2.1358 0.0005 9 8 3.3569 -1.2005 0.0011 10 6 3.9729 -2.4047 -0.1051 11 6 3.2251 -3.5638 -0.0900 12 6 3.8410 -4.8008 -0.1970 13 6 5.2105 -4.8836 -0.3194 14 6 5.9852 -3.7251 -0.3373 15 16 7.7238 -3.4822 -0.4784 16 6 7.5195 -1.7903 -0.3888 17 7 6.2861 -1.4729 -0.2674 18 6 5.3812 -2.4686 -0.2309 19 1 -0.4850 0.8400 -0.0004 20 1 2.1509 -3.5068 0.0059 21 1 3.2458 -5.7019 -0.1845 22 1 5.6858 -5.8499 -0.4030 23 1 8.3300 -1.0774 -0.4249 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089195214.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:27 Heat of formation + Delta-G solvation = 11.651302 kcal Electronic energy + Delta-G solvation = -12229.282869 eV Core-core repulsion = 9941.240018 eV Total energy + Delta-G solvation = -2288.042851 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.53987 -39.60173 -37.23227 -34.57113 -31.05978 -30.72657 -27.37741 -25.85045 -23.45410 -22.61213 -20.14350 -19.80753 -17.91570 -17.29735 -16.60631 -16.34798 -16.25629 -15.48922 -15.15452 -14.96669 -14.45529 -14.05786 -13.47539 -12.98967 -12.96336 -12.50553 -12.18036 -12.14455 -11.53311 -11.11823 -10.54296 -10.52596 -9.68768 -8.65046 -8.60526 -6.30233 -0.41251 0.29735 0.40182 0.77937 1.25449 1.28804 1.48153 1.50796 2.22127 2.61605 2.85453 2.99991 3.18910 3.97265 4.11864 4.29590 4.47093 4.54651 4.75657 5.18471 5.22517 5.50000 5.57259 5.70784 5.97165 6.71682 6.74567 7.46635 8.49494 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.039361 B = 0.009597 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.187042 B = 2916.767366 C = 3615.849486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.259 1.259 6 H -0.273 1.273 7 C -0.405 4.405 8 H 0.096 0.904 9 O -0.224 6.224 10 C 0.166 3.834 11 C -0.242 4.242 12 C -0.035 4.035 13 C -0.148 4.148 14 C -0.149 4.149 15 S 0.143 5.857 16 C 0.036 3.964 17 N -0.492 5.492 18 C -0.010 4.010 19 H 0.288 0.712 20 H 0.130 0.870 21 H 0.169 0.831 22 H 0.164 0.836 23 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.967 -8.122 -1.036 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.184 1.184 6 H -0.197 1.197 7 C -0.481 4.481 8 H 0.113 0.887 9 O -0.129 6.129 10 C 0.112 3.888 11 C -0.265 4.265 12 C -0.057 4.057 13 C -0.172 4.172 14 C -0.268 4.268 15 S 0.396 5.604 16 C -0.268 4.268 17 N -0.205 5.205 18 C -0.129 4.129 19 H 0.098 0.902 20 H 0.148 0.852 21 H 0.186 0.814 22 H 0.181 0.819 23 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 14.616 -7.719 -1.076 16.564 hybrid contribution -1.285 1.072 0.126 1.678 sum 13.331 -6.648 -0.950 14.927 Atomic orbital electron populations 1.69699 1.06505 1.29884 1.48489 1.25147 0.95791 1.01731 0.95113 0.85352 0.78709 0.78205 0.79318 1.19262 1.18359 1.19739 1.20882 0.77605 0.96759 1.52806 0.88674 1.83578 1.21750 1.27265 1.80348 1.19143 0.89090 0.86257 0.94292 1.21140 1.00915 0.92124 1.12292 1.21251 0.94265 0.96824 0.93324 1.20431 0.92914 0.96274 1.07593 1.23925 0.98795 0.97179 1.06871 1.83179 0.98971 1.04377 1.73908 1.28528 0.96188 0.99739 1.02340 1.66031 1.02357 1.36553 1.15556 1.18460 0.91843 0.88665 1.13936 0.90176 0.85208 0.81404 0.81889 0.74824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.40 13.96 21.61 0.30 -53.09 14 2 C 0.02 1.34 5.49 84.82 0.47 1.80 14 3 Si 0.96 47.12 28.62 68.60 1.96 49.08 14 4 H -0.27 -12.75 7.11 99.48 0.71 -12.04 14 5 H -0.26 -11.61 7.11 99.48 0.71 -10.91 14 6 H -0.27 -14.02 7.11 99.48 0.71 -13.32 14 7 C -0.40 -23.96 9.94 67.91 0.67 -23.29 14 8 H 0.10 5.69 5.41 -2.91 -0.02 5.67 14 9 O -0.22 -12.86 8.59 -21.63 -0.19 -13.05 14 10 C 0.17 8.27 6.71 23.01 0.15 8.42 14 11 C -0.24 -10.38 9.13 22.29 0.20 -10.18 14 12 C -0.04 -1.13 10.03 22.24 0.22 -0.90 14 13 C -0.15 -4.36 10.06 22.43 0.23 -4.14 14 14 C -0.15 -5.13 6.55 22.93 0.15 -4.98 14 15 S 0.14 3.56 23.17 -56.49 -1.31 2.25 14 16 C 0.04 1.06 12.10 130.81 1.58 2.65 14 17 N -0.49 -20.60 10.56 -194.42 -2.05 -22.66 14 18 C -0.01 -0.46 6.94 39.92 0.28 -0.18 14 19 H 0.29 15.53 8.31 -92.71 -0.77 14.76 14 20 H 0.13 5.87 5.57 -2.91 -0.02 5.86 14 21 H 0.17 3.83 8.06 -2.91 -0.02 3.81 14 22 H 0.16 3.38 8.06 -2.91 -0.02 3.35 14 23 H 0.24 4.46 8.06 -2.91 -0.02 4.44 14 Total: -1.00 -70.54 226.65 3.92 -66.62 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: 1.25 Total: 1.64 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 3.96 Total: -30.79 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -1.75 Total: -75.75 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.19 Total: -13.05 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.96 Total: 49.08 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.31 Total: 2.25 kcal Total: -70.54 3.92 -66.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089195214.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.273 kcal (2) G-P(sol) polarization free energy of solvation -70.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds