Wall clock time and date at job start Mon Mar 30 2020 03:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47065 * 299.99424 * 3 2 1 6 6 H 1.48497 * 109.47543 * 60.00041 * 3 2 1 7 7 C 1.40114 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99575 * 179.97438 * 7 2 1 9 9 C 1.39427 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.39910 * 126.76206 * 180.02562 * 9 7 2 11 11 N 1.32559 * 107.37433 * 180.25945 * 10 9 7 12 12 C 1.32368 * 109.22703 * 359.62233 * 11 10 9 13 13 C 1.41827 * 125.32945 * 180.17306 * 12 11 10 14 14 C 1.37150 * 125.47358 * 0.24150 * 13 12 11 15 15 C 1.37452 * 113.19293 * 179.97438 * 14 13 12 16 16 C 1.33879 * 115.13163 * 0.02562 * 15 14 13 17 17 S 1.70607 * 111.03122 * 359.71865 * 16 15 14 18 18 O 1.34775 * 109.34552 * 0.38330 * 12 11 10 19 19 H 0.97000 * 119.99512 * 359.97438 * 1 2 3 20 20 H 1.08002 * 126.30998 * 359.97438 * 10 9 7 21 21 H 1.07999 * 123.40714 * 0.02562 * 14 13 12 22 22 H 1.08007 * 122.43201 * 179.97438 * 15 14 13 23 23 H 1.07995 * 124.48208 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3463 -0.0006 5 1 1.8839 2.3963 -1.2126 6 1 1.8839 2.3965 1.2125 7 6 2.0090 -1.2135 0.0005 8 1 3.0890 -1.2135 0.0001 9 6 1.3118 -2.4209 0.0005 10 6 1.8638 -3.7065 0.0015 11 7 0.8575 -4.5694 -0.0046 12 6 -0.2870 -3.9043 -0.0011 13 6 -1.5775 -4.4927 -0.0022 14 6 -1.8383 -5.8391 -0.0023 15 6 -3.1817 -6.1303 -0.0028 16 6 -3.9941 -5.0662 -0.0038 17 16 -3.0999 -3.6132 0.0039 18 8 -0.0341 -2.5805 -0.0010 19 1 -0.4849 0.8401 0.0004 20 1 2.9158 -3.9508 0.0021 21 1 -1.0663 -6.5944 -0.0011 22 1 -3.5547 -7.1439 -0.0034 23 1 -5.0727 -5.1204 -0.0047 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095635035.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:59 Heat of formation + Delta-G solvation = 29.842371 kcal Electronic energy + Delta-G solvation = -12111.302790 eV Core-core repulsion = 9824.048763 eV Total energy + Delta-G solvation = -2287.254027 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.02838 -36.97149 -34.19109 -32.84166 -30.68324 -28.51928 -25.22205 -23.50279 -20.92004 -20.79019 -18.20322 -17.72580 -17.16917 -15.49301 -14.88543 -14.78263 -14.28122 -13.55285 -12.67429 -12.37514 -12.22753 -11.98184 -11.58251 -11.53996 -11.38115 -11.03389 -10.57964 -10.12538 -10.00990 -9.71924 -9.04307 -8.67028 -7.87653 -7.23897 -7.15962 -4.71049 1.36113 2.27315 2.66184 2.77657 2.85154 2.92143 3.09028 3.53506 3.59973 4.35744 4.53989 4.86894 5.62788 5.79391 5.95870 6.25732 6.55155 6.62027 6.75462 6.80116 7.09145 7.13335 7.37425 7.82366 7.96162 8.19818 8.26200 9.41360 9.72971 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.048186 B = 0.008349 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.941887 B = 3353.020107 C = 3924.116838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.058 3.942 3 Si 0.933 3.067 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.405 4.405 8 H 0.116 0.884 9 C 0.183 3.817 10 C -0.197 4.197 11 N -0.413 5.413 12 C 0.043 3.957 13 C -0.040 4.040 14 C -0.177 4.177 15 C -0.115 4.115 16 C -0.309 4.309 17 S 0.175 5.825 18 O -0.183 6.183 19 H 0.293 0.707 20 H 0.158 0.842 21 H 0.140 0.860 22 H 0.128 0.872 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 -0.357 0.016 3.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.166 4.166 3 Si 0.755 3.245 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.434 4.434 8 H 0.133 0.867 9 C 0.126 3.874 10 C -0.352 4.352 11 N -0.142 5.142 12 C -0.147 4.147 13 C -0.159 4.159 14 C -0.206 4.206 15 C -0.147 4.147 16 C -0.446 4.446 17 S 0.439 5.561 18 O -0.073 6.073 19 H 0.104 0.896 20 H 0.176 0.824 21 H 0.158 0.842 22 H 0.145 0.855 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.020 0.568 0.017 4.060 hybrid contribution 0.638 -0.128 -0.009 0.650 sum -3.382 0.440 0.008 3.411 Atomic orbital electron populations 1.69794 1.07803 1.30804 1.28865 1.26346 0.95247 1.02678 0.92379 0.85826 0.80590 0.78954 0.79105 1.17731 1.19232 1.19223 1.18973 0.95251 0.87257 1.41933 0.86651 1.20779 0.79335 0.95597 0.91730 1.23082 0.97712 0.88240 1.26196 1.69636 0.97717 1.35660 1.11141 1.19983 0.92036 0.79204 1.23431 1.20646 0.92503 0.95718 1.07024 1.20328 0.96152 0.93958 1.10182 1.19738 0.92525 0.99021 1.03384 1.24802 1.03722 0.98044 1.18030 1.83201 0.94919 1.07171 1.70772 1.84927 1.24150 1.24202 1.73973 0.89622 0.82429 0.84238 0.85458 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.61 12.04 55.56 0.67 -17.94 14 2 C 0.06 1.35 5.50 -17.27 -0.09 1.26 14 3 Si 0.93 16.79 29.56 -169.99 -5.03 11.77 14 4 H -0.25 -4.41 7.11 56.52 0.40 -4.00 14 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 14 6 H -0.27 -4.75 7.11 56.52 0.40 -4.35 14 7 C -0.41 -10.01 9.32 -38.44 -0.36 -10.37 14 8 H 0.12 2.55 7.85 -52.48 -0.41 2.14 14 9 C 0.18 4.93 6.82 -38.51 -0.26 4.67 14 10 C -0.20 -5.07 11.97 -16.61 -0.20 -5.27 14 11 N -0.41 -11.01 11.11 -12.16 -0.14 -11.14 14 12 C 0.04 1.15 7.82 -15.95 -0.12 1.03 14 13 C -0.04 -0.94 6.29 -38.61 -0.24 -1.18 14 14 C -0.18 -3.63 10.14 -40.26 -0.41 -4.04 14 15 C -0.11 -2.00 10.15 -41.40 -0.42 -2.42 14 16 C -0.31 -5.25 10.92 29.20 0.32 -4.93 14 17 S 0.17 3.47 23.05 -107.50 -2.48 0.99 14 18 O -0.18 -5.17 9.17 0.87 0.01 -5.16 14 19 H 0.29 6.44 8.30 -40.82 -0.34 6.10 14 20 H 0.16 3.55 8.06 -52.49 -0.42 3.12 14 21 H 0.14 2.81 8.06 -52.49 -0.42 2.38 14 22 H 0.13 1.81 8.06 -52.48 -0.42 1.38 14 23 H 0.15 2.09 8.06 -52.49 -0.42 1.67 14 LS Contribution 233.55 15.07 3.52 3.52 Total: -1.00 -28.65 233.55 -6.47 -35.13 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -1.24 Total: 4.10 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -1.79 Total: -21.25 kcal Atomic # 7 Polarization: -29.62 SS G_CDS: 0.53 Total: -29.08 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.01 Total: -5.16 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.48 Total: 0.99 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.65 -6.47 -35.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095635035.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.968 kcal (2) G-P(sol) polarization free energy of solvation -28.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds