Wall clock time and date at job start Mon Mar 30 2020 03:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47065 * 299.99424 * 3 2 1 6 6 H 1.48497 * 109.47543 * 60.00041 * 3 2 1 7 7 C 1.40114 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99575 * 179.97438 * 7 2 1 9 9 C 1.39427 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.39910 * 126.76206 * 180.02562 * 9 7 2 11 11 N 1.32559 * 107.37433 * 180.25945 * 10 9 7 12 12 C 1.32368 * 109.22703 * 359.62233 * 11 10 9 13 13 C 1.41827 * 125.32945 * 180.17306 * 12 11 10 14 14 C 1.37150 * 125.47358 * 0.24150 * 13 12 11 15 15 C 1.37452 * 113.19293 * 179.97438 * 14 13 12 16 16 C 1.33879 * 115.13163 * 0.02562 * 15 14 13 17 17 S 1.70607 * 111.03122 * 359.71865 * 16 15 14 18 18 O 1.34775 * 109.34552 * 0.38330 * 12 11 10 19 19 H 0.97000 * 119.99512 * 359.97438 * 1 2 3 20 20 H 1.08002 * 126.30998 * 359.97438 * 10 9 7 21 21 H 1.07999 * 123.40714 * 0.02562 * 14 13 12 22 22 H 1.08007 * 122.43201 * 179.97438 * 15 14 13 23 23 H 1.07995 * 124.48208 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3463 -0.0006 5 1 1.8839 2.3963 -1.2126 6 1 1.8839 2.3965 1.2125 7 6 2.0090 -1.2135 0.0005 8 1 3.0890 -1.2135 0.0001 9 6 1.3118 -2.4209 0.0005 10 6 1.8638 -3.7065 0.0015 11 7 0.8575 -4.5694 -0.0046 12 6 -0.2870 -3.9043 -0.0011 13 6 -1.5775 -4.4927 -0.0022 14 6 -1.8383 -5.8391 -0.0023 15 6 -3.1817 -6.1303 -0.0028 16 6 -3.9941 -5.0662 -0.0038 17 16 -3.0999 -3.6132 0.0039 18 8 -0.0341 -2.5805 -0.0010 19 1 -0.4849 0.8401 0.0004 20 1 2.9158 -3.9508 0.0021 21 1 -1.0663 -6.5944 -0.0011 22 1 -3.5547 -7.1439 -0.0034 23 1 -5.0727 -5.1204 -0.0047 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095635035.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:59 Heat of formation + Delta-G solvation = 10.378741 kcal Electronic energy + Delta-G solvation = -12112.146797 eV Core-core repulsion = 9824.048763 eV Total energy + Delta-G solvation = -2288.098033 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.97439 -38.52983 -35.99241 -34.80792 -32.44283 -30.27354 -26.95595 -25.20455 -22.76512 -22.62178 -19.83875 -19.60395 -18.84981 -17.20121 -16.77758 -16.45237 -15.97414 -15.23763 -14.36270 -13.96028 -13.91910 -13.47234 -13.24705 -13.08959 -12.99959 -12.86926 -12.01432 -11.87362 -11.66080 -11.49207 -11.01829 -10.39797 -9.43980 -8.98612 -8.97805 -6.60298 -0.25053 0.66778 1.04744 1.27239 1.36920 1.56416 1.57997 1.87852 2.09796 2.46964 2.68265 2.99536 3.96229 4.31029 4.52600 4.69121 4.77276 4.86440 4.98066 5.21269 5.44986 5.48450 5.66243 5.96636 6.05311 6.31488 6.41422 7.45310 8.02127 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.048186 B = 0.008349 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.941887 B = 3353.020107 C = 3924.116838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.014 3.986 3 Si 1.017 2.983 4 H -0.241 1.241 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.134 0.866 9 C 0.146 3.854 10 C -0.226 4.226 11 N -0.436 5.436 12 C 0.034 3.966 13 C -0.109 4.109 14 C -0.150 4.150 15 C -0.125 4.125 16 C -0.267 4.267 17 S 0.169 5.831 18 O -0.205 6.205 19 H 0.302 0.698 20 H 0.178 0.822 21 H 0.138 0.862 22 H 0.171 0.829 23 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 -0.334 0.015 4.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.206 4.206 3 Si 0.834 3.166 4 H -0.164 1.164 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.455 4.455 8 H 0.152 0.848 9 C 0.090 3.910 10 C -0.378 4.378 11 N -0.164 5.164 12 C -0.158 4.158 13 C -0.227 4.227 14 C -0.182 4.182 15 C -0.155 4.155 16 C -0.404 4.404 17 S 0.434 5.566 18 O -0.096 6.096 19 H 0.113 0.887 20 H 0.195 0.805 21 H 0.156 0.844 22 H 0.189 0.811 23 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.376 0.582 0.017 5.408 hybrid contribution 0.776 -0.320 -0.009 0.839 sum -4.601 0.262 0.007 4.608 Atomic orbital electron populations 1.69870 1.09793 1.32495 1.29454 1.27502 0.95955 1.06334 0.90841 0.84619 0.79450 0.73237 0.79287 1.16364 1.18554 1.18534 1.19506 0.96295 0.87499 1.42245 0.84814 1.21367 0.79312 0.96987 0.93353 1.23371 0.98557 0.88068 1.27846 1.69585 0.98110 1.35951 1.12743 1.20744 0.93469 0.78914 1.22663 1.20938 0.92622 0.97329 1.11802 1.20699 0.98029 0.92860 1.06632 1.20070 0.90744 1.01355 1.03374 1.25382 1.05633 0.96056 1.13320 1.83230 0.93938 1.08998 1.70451 1.84879 1.24963 1.25206 1.74546 0.88657 0.80490 0.84406 0.81120 0.78583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.36 12.04 21.86 0.26 -40.10 14 2 C 0.01 0.66 5.50 85.29 0.47 1.13 14 3 Si 1.02 33.90 29.56 68.60 2.03 35.92 14 4 H -0.24 -7.45 7.11 99.48 0.71 -6.74 14 5 H -0.26 -8.37 7.11 99.48 0.71 -7.67 14 6 H -0.26 -8.36 7.11 99.48 0.71 -7.66 14 7 C -0.43 -21.74 9.32 23.01 0.21 -21.52 14 8 H 0.13 6.00 7.85 -2.91 -0.02 5.98 14 9 C 0.15 8.26 6.82 22.96 0.16 8.42 14 10 C -0.23 -12.22 11.97 84.99 1.02 -11.20 14 11 N -0.44 -24.22 11.11 -305.69 -3.40 -27.62 14 12 C 0.03 1.87 7.82 85.50 0.67 2.54 14 13 C -0.11 -5.11 6.29 22.90 0.14 -4.97 14 14 C -0.15 -5.98 10.14 21.83 0.22 -5.76 14 15 C -0.12 -3.84 10.15 21.09 0.21 -3.62 14 16 C -0.27 -7.89 10.92 66.83 0.73 -7.16 14 17 S 0.17 6.51 23.05 -56.49 -1.30 5.21 14 18 O -0.21 -12.18 9.17 -19.80 -0.18 -12.36 14 19 H 0.30 13.53 8.30 -92.71 -0.77 12.76 14 20 H 0.18 8.35 8.06 -2.91 -0.02 8.33 14 21 H 0.14 5.44 8.06 -2.91 -0.02 5.42 14 22 H 0.17 3.84 8.06 -2.91 -0.02 3.81 14 23 H 0.20 4.12 8.06 -2.91 -0.02 4.09 14 Total: -1.00 -65.26 233.55 2.48 -62.77 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 1.24 Total: 18.33 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 3.84 Total: -42.16 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -3.13 Total: -67.72 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.18 Total: -12.36 kcal Atomic # 14 Polarization: 33.90 SS G_CDS: 2.03 Total: 35.92 kcal Atomic # 16 Polarization: 6.51 SS G_CDS: -1.30 Total: 5.21 kcal Total: -65.26 2.48 -62.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095635035.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.152 kcal (2) G-P(sol) polarization free energy of solvation -65.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds