Wall clock time and date at job start Mon Mar 30 2020 03:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 119.99586 * 2 1 4 4 C 1.39671 * 120.00348 * 180.02562 * 2 1 3 5 5 C 1.38934 * 120.07790 * 174.30807 * 4 2 1 6 6 C 1.38077 * 119.92785 * 179.97438 * 5 4 2 7 7 C 1.38308 * 120.07377 * 359.72613 * 6 5 4 8 8 C 1.38263 * 120.15059 * 0.54521 * 7 6 5 9 9 C 1.50698 * 119.96404 * 179.72458 * 8 7 6 10 10 H 1.09003 * 109.46928 * 159.73064 * 9 8 7 11 11 N 1.46900 * 109.46949 * 39.73251 * 9 8 7 12 12 C 1.50696 * 109.47089 * 279.72813 * 9 8 7 13 13 H 1.08002 * 120.00443 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99804 * 179.72282 * 12 9 8 15 15 N 1.31519 * 120.00150 * 0.27977 * 14 12 9 16 16 Si 1.86795 * 120.00138 * 180.27758 * 14 12 9 17 17 H 1.48506 * 109.47121 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47237 * 120.00001 * 16 14 12 19 19 H 1.48507 * 109.47455 * 240.00396 * 16 14 12 20 20 C 1.38129 * 120.07251 * 359.45587 * 8 7 6 21 21 H 1.09001 * 109.47285 * 269.99750 * 1 2 3 22 22 H 1.08998 * 109.47069 * 29.99959 * 1 2 3 23 23 H 1.09006 * 109.46649 * 149.99805 * 1 2 3 24 24 H 1.09005 * 109.46765 * 185.05620 * 3 2 1 25 25 H 1.08988 * 109.47324 * 305.05692 * 3 2 1 26 26 H 1.09004 * 109.46983 * 65.06292 * 3 2 1 27 27 H 1.08002 * 120.03161 * 359.97438 * 5 4 2 28 28 H 1.08003 * 119.96264 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.92713 * 180.29795 * 7 6 5 30 30 H 1.00896 * 110.99968 * 299.99917 * 11 9 8 31 31 H 1.00896 * 111.00092 * 63.95149 * 11 9 8 32 32 H 0.96997 * 120.00295 * 179.97438 * 15 14 12 33 33 H 1.07995 * 120.03820 * 180.28860 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2095 -0.0005 5 6 3.5476 -1.2143 -0.1198 6 6 4.2350 -2.4118 -0.1194 7 6 3.5476 -3.6055 0.0052 8 6 2.1696 -3.6048 0.1184 9 6 1.4244 -4.9082 0.2477 10 1 0.4396 -4.7226 0.6767 11 7 2.1763 -5.8174 1.1228 12 6 1.2691 -5.5352 -1.1138 13 1 1.6704 -5.0397 -1.9856 14 6 0.6203 -6.7446 -1.2458 15 7 0.1320 -7.3483 -0.1843 16 14 0.4346 -7.5257 -2.9325 17 1 1.0664 -6.6529 -3.9544 18 1 1.0980 -8.8543 -2.9384 19 1 -1.0076 -7.6911 -3.2454 20 6 1.4758 -2.4104 0.1187 21 1 -0.3634 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 3.2657 1.0717 -0.0906 25 1 1.8679 1.8786 -0.8411 26 1 2.0038 1.8001 0.9319 27 1 4.0853 -0.2822 -0.2126 28 1 5.3111 -2.4161 -0.2117 29 1 4.0881 -4.5405 0.0100 30 1 3.0935 -6.0051 0.7466 31 1 2.2384 -5.4484 2.0598 32 1 -0.3247 -8.1989 -0.2772 33 1 0.3998 -2.4103 0.2119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104494506.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:58 Heat of formation + Delta-G solvation = 41.005688 kcal Electronic energy + Delta-G solvation = -14694.222484 eV Core-core repulsion = 12334.084515 eV Total energy + Delta-G solvation = -2360.137969 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.13987 -36.27754 -34.00224 -31.53175 -30.16158 -28.94234 -27.84899 -25.81594 -24.39896 -22.41727 -21.05548 -19.23472 -16.87380 -16.31873 -15.34467 -14.95203 -14.84271 -14.46688 -14.14255 -13.53709 -13.23010 -12.98188 -12.46620 -12.37625 -11.94958 -11.87036 -11.75069 -11.21026 -10.90188 -10.81072 -10.46370 -10.32219 -9.75935 -9.37745 -9.07996 -8.38764 -7.92153 -7.02668 -6.79596 -5.82588 -3.96644 2.15763 2.28334 3.35836 3.42832 3.43981 3.48609 4.47868 4.64251 5.07838 5.23747 5.39738 5.42203 5.52344 5.54593 5.71398 5.81497 5.86064 6.01057 6.13822 6.23042 6.35020 6.42880 6.74256 6.87603 7.18738 7.24243 7.46207 7.63153 7.74240 7.96958 7.99808 8.26605 8.71138 9.08868 9.22079 9.71426 11.21897 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034163 B = 0.007574 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.401196 B = 3695.734096 C = 3949.620737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.645 5.645 3 C 0.095 3.905 4 C 0.205 3.795 5 C -0.224 4.224 6 C -0.080 4.080 7 C -0.175 4.175 8 C -0.028 4.028 9 C 0.252 3.748 10 H 0.044 0.956 11 N -0.809 5.809 12 C -0.526 4.526 13 H 0.054 0.946 14 C 0.083 3.917 15 N -0.848 5.848 16 Si 0.883 3.117 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.192 4.192 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.318 0.682 31 H 0.298 0.702 32 H 0.254 0.746 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 13.549 1.161 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.360 5.360 3 C -0.049 4.049 4 C 0.106 3.894 5 C -0.246 4.246 6 C -0.099 4.099 7 C -0.195 4.195 8 C -0.031 4.031 9 C 0.142 3.858 10 H 0.062 0.938 11 N -0.334 5.334 12 C -0.565 4.565 13 H 0.072 0.928 14 C -0.124 4.124 15 N -0.483 5.483 16 Si 0.711 3.289 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.215 4.215 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.974 12.987 1.087 13.368 hybrid contribution 0.552 0.438 -0.906 1.147 sum 3.526 13.425 0.181 13.881 Atomic orbital electron populations 1.21537 0.79929 1.02382 1.00768 1.46179 1.04677 1.03019 1.82092 1.21577 0.97800 0.85358 1.00125 1.17852 0.91185 0.85416 0.94973 1.20432 0.92265 0.97898 1.14010 1.20760 0.98566 0.92313 0.98235 1.20764 0.94461 0.97207 1.07046 1.21536 0.94076 0.97693 0.89807 1.18216 0.91724 0.82227 0.93637 0.93780 1.59226 1.21001 1.50345 1.02869 1.20871 1.38476 1.05884 0.91265 0.92786 1.24952 0.94832 0.96826 0.95768 1.70121 1.35084 1.15470 1.27661 0.86709 0.77626 0.79388 0.85205 1.19895 1.21045 1.21133 1.20628 0.99498 0.90598 1.10798 0.93916 0.92277 0.91004 0.90592 0.93351 0.93750 0.87115 0.87274 0.86901 0.86953 0.89234 0.93572 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.24 10.10 59.85 0.60 1.85 16 2 N -0.65 -9.54 3.41 -187.54 -0.64 -10.18 16 3 C 0.09 1.06 10.63 59.85 0.64 1.70 16 4 C 0.20 3.65 6.54 -83.79 -0.55 3.11 16 5 C -0.22 -3.76 9.31 -39.38 -0.37 -4.13 16 6 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 7 C -0.17 -3.49 9.29 -39.55 -0.37 -3.86 16 8 C -0.03 -0.61 4.88 -104.65 -0.51 -1.12 16 9 C 0.25 6.36 2.85 -70.02 -0.20 6.16 16 10 H 0.04 1.22 8.00 -51.93 -0.42 0.81 16 11 N -0.81 -19.38 8.35 -6.65 -0.06 -19.44 16 12 C -0.53 -14.72 8.71 -34.44 -0.30 -15.02 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.08 2.34 5.39 -17.82 -0.10 2.24 16 15 N -0.85 -24.99 12.76 55.43 0.71 -24.28 16 16 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.19 -3.90 8.78 -39.38 -0.35 -4.24 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 23 H 0.07 1.00 6.45 -51.93 -0.34 0.67 16 24 H 0.08 0.82 5.31 -51.93 -0.28 0.54 16 25 H 0.05 0.47 8.14 -51.94 -0.42 0.05 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.11 1.56 5.74 -52.49 -0.30 1.26 16 28 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.11 2.21 6.64 -52.49 -0.35 1.86 16 30 H 0.32 7.27 7.33 -39.29 -0.29 6.98 16 31 H 0.30 6.43 9.06 -39.29 -0.36 6.08 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 33 H 0.12 2.30 6.28 -52.49 -0.33 1.97 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -30.91 273.32 -7.08 -38.00 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.30 Total: 10.27 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -1.89 Total: -15.11 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.01 Total: -53.90 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.91 -7.08 -38.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104494506.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.002 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds