Wall clock time and date at job start Mon Mar 30 2020 03:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 119.99586 * 2 1 4 4 C 1.39671 * 120.00348 * 180.02562 * 2 1 3 5 5 C 1.38934 * 120.07790 * 174.30807 * 4 2 1 6 6 C 1.38077 * 119.92785 * 179.97438 * 5 4 2 7 7 C 1.38308 * 120.07377 * 359.72613 * 6 5 4 8 8 C 1.38263 * 120.15059 * 0.54521 * 7 6 5 9 9 C 1.50698 * 119.96404 * 179.72458 * 8 7 6 10 10 H 1.09003 * 109.46928 * 159.73064 * 9 8 7 11 11 N 1.46900 * 109.46949 * 39.73251 * 9 8 7 12 12 C 1.50696 * 109.47089 * 279.72813 * 9 8 7 13 13 H 1.08002 * 120.00443 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99804 * 179.72282 * 12 9 8 15 15 N 1.31519 * 120.00150 * 0.27977 * 14 12 9 16 16 Si 1.86795 * 120.00138 * 180.27758 * 14 12 9 17 17 H 1.48506 * 109.47121 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47237 * 120.00001 * 16 14 12 19 19 H 1.48507 * 109.47455 * 240.00396 * 16 14 12 20 20 C 1.38129 * 120.07251 * 359.45587 * 8 7 6 21 21 H 1.09001 * 109.47285 * 269.99750 * 1 2 3 22 22 H 1.08998 * 109.47069 * 29.99959 * 1 2 3 23 23 H 1.09006 * 109.46649 * 149.99805 * 1 2 3 24 24 H 1.09005 * 109.46765 * 185.05620 * 3 2 1 25 25 H 1.08988 * 109.47324 * 305.05692 * 3 2 1 26 26 H 1.09004 * 109.46983 * 65.06292 * 3 2 1 27 27 H 1.08002 * 120.03161 * 359.97438 * 5 4 2 28 28 H 1.08003 * 119.96264 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.92713 * 180.29795 * 7 6 5 30 30 H 1.00896 * 110.99968 * 299.99917 * 11 9 8 31 31 H 1.00896 * 111.00092 * 63.95149 * 11 9 8 32 32 H 0.96997 * 120.00295 * 179.97438 * 15 14 12 33 33 H 1.07995 * 120.03820 * 180.28860 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2095 -0.0005 5 6 3.5476 -1.2143 -0.1198 6 6 4.2350 -2.4118 -0.1194 7 6 3.5476 -3.6055 0.0052 8 6 2.1696 -3.6048 0.1184 9 6 1.4244 -4.9082 0.2477 10 1 0.4396 -4.7226 0.6767 11 7 2.1763 -5.8174 1.1228 12 6 1.2691 -5.5352 -1.1138 13 1 1.6704 -5.0397 -1.9856 14 6 0.6203 -6.7446 -1.2458 15 7 0.1320 -7.3483 -0.1843 16 14 0.4346 -7.5257 -2.9325 17 1 1.0664 -6.6529 -3.9544 18 1 1.0980 -8.8543 -2.9384 19 1 -1.0076 -7.6911 -3.2454 20 6 1.4758 -2.4104 0.1187 21 1 -0.3634 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 3.2657 1.0717 -0.0906 25 1 1.8679 1.8786 -0.8411 26 1 2.0038 1.8001 0.9319 27 1 4.0853 -0.2822 -0.2126 28 1 5.3111 -2.4161 -0.2117 29 1 4.0881 -4.5405 0.0100 30 1 3.0935 -6.0051 0.7466 31 1 2.2384 -5.4484 2.0598 32 1 -0.3247 -8.1989 -0.2772 33 1 0.3998 -2.4103 0.2119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104494506.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:58 Heat of formation + Delta-G solvation = 20.374868 kcal Electronic energy + Delta-G solvation = -14695.117104 eV Core-core repulsion = 12334.084515 eV Total energy + Delta-G solvation = -2361.032588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54245 -37.69254 -35.72728 -33.55338 -31.60454 -30.35111 -29.01634 -27.83734 -25.63513 -24.18992 -22.47832 -20.75896 -18.48178 -18.17517 -16.72139 -16.58566 -16.21570 -15.88942 -15.87287 -15.07134 -14.73426 -14.39088 -14.24077 -13.44294 -13.36314 -13.24586 -13.01773 -12.84941 -12.75223 -12.55081 -12.10849 -12.00460 -11.46342 -11.27306 -10.58461 -10.55111 -9.51125 -8.88189 -8.09765 -7.97378 -6.19506 0.69242 0.82724 1.41103 1.43006 1.54338 2.32430 2.46667 3.11747 3.25680 4.01425 4.11120 4.27214 4.43007 4.47283 4.53273 4.54859 4.72125 4.75403 4.79225 4.89280 4.91917 4.97855 5.28107 5.36136 5.47666 5.72117 5.77523 6.03038 6.06606 6.23157 6.45338 6.66753 6.67461 7.11605 7.27794 7.52574 9.05785 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034163 B = 0.007574 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.401196 B = 3695.734096 C = 3949.620737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.648 5.648 3 C 0.088 3.912 4 C 0.207 3.793 5 C -0.219 4.219 6 C -0.071 4.071 7 C -0.193 4.193 8 C -0.051 4.051 9 C 0.258 3.742 10 H 0.005 0.995 11 N -0.817 5.817 12 C -0.539 4.539 13 H 0.042 0.958 14 C 0.034 3.966 15 N -0.881 5.881 16 Si 0.949 3.051 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.216 4.216 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.109 0.891 30 H 0.324 0.676 31 H 0.310 0.690 32 H 0.256 0.744 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 15.625 0.364 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.361 5.361 3 C -0.054 4.054 4 C 0.105 3.895 5 C -0.241 4.241 6 C -0.090 4.090 7 C -0.214 4.214 8 C -0.054 4.054 9 C 0.148 3.852 10 H 0.023 0.977 11 N -0.344 5.344 12 C -0.578 4.578 13 H 0.060 0.940 14 C -0.169 4.169 15 N -0.518 5.518 16 Si 0.775 3.225 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.239 4.239 21 H 0.066 0.934 22 H 0.108 0.892 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.162 0.838 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.065 0.935 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.236 15.107 0.291 15.692 hybrid contribution 0.152 -0.053 -0.621 0.642 sum 4.388 15.054 -0.331 15.684 Atomic orbital electron populations 1.21647 0.79229 1.02873 1.01295 1.46493 1.05503 1.03206 1.80922 1.21835 0.97848 0.83820 1.01867 1.17961 0.91964 0.85766 0.93784 1.20855 0.91831 0.99212 1.12214 1.21113 1.00280 0.91327 0.96266 1.20786 0.93591 0.98439 1.08565 1.21172 0.95023 0.96538 0.92700 1.17849 0.90744 0.84295 0.92352 0.97674 1.59038 1.21207 1.50709 1.03477 1.21120 1.38317 1.06191 0.92187 0.93957 1.25695 0.94520 0.97339 0.99376 1.70242 1.35947 1.15848 1.29721 0.85675 0.77732 0.78379 0.80734 1.19673 1.20448 1.20487 1.20593 0.99183 0.91532 1.12625 0.93400 0.89216 0.93050 0.89908 0.91380 0.92103 0.83528 0.83780 0.87327 0.86318 0.87942 0.93521 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.24 10.10 127.77 1.29 3.53 16 2 N -0.65 -17.59 3.41 -747.26 -2.55 -20.14 16 3 C 0.09 1.62 10.63 127.77 1.36 2.98 16 4 C 0.21 7.07 6.54 38.22 0.25 7.32 16 5 C -0.22 -6.67 9.31 22.40 0.21 -6.46 16 6 C -0.07 -2.30 10.04 22.25 0.22 -2.08 16 7 C -0.19 -7.69 9.29 22.29 0.21 -7.48 16 8 C -0.05 -2.32 4.88 -19.88 -0.10 -2.41 16 9 C 0.26 13.64 2.85 43.42 0.12 13.76 16 10 H 0.01 0.32 8.00 -2.39 -0.02 0.30 16 11 N -0.82 -40.56 8.35 -174.96 -1.46 -42.02 16 12 C -0.54 -31.18 8.71 25.60 0.22 -30.96 16 13 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 14 C 0.03 1.96 5.39 84.65 0.46 2.42 16 15 N -0.88 -53.23 12.76 21.45 0.27 -52.96 16 16 Si 0.95 45.16 29.54 68.60 2.03 47.19 16 17 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 C -0.22 -8.96 8.78 22.40 0.20 -8.76 16 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.09 1.60 8.07 -2.39 -0.02 1.58 16 23 H 0.05 1.45 6.45 -2.38 -0.02 1.43 16 24 H 0.08 1.40 5.31 -2.38 -0.01 1.38 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.15 3.39 5.74 -2.91 -0.02 3.37 16 28 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.11 4.29 6.64 -2.91 -0.02 4.27 16 30 H 0.32 15.23 7.33 -89.70 -0.66 14.57 16 31 H 0.31 13.87 9.06 -89.70 -0.81 13.06 16 32 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.10 4.41 6.28 -2.91 -0.02 4.39 16 Total: -1.00 -67.66 273.32 2.39 -65.28 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.34 Total: 30.81 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.44 Total: -28.16 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -3.73 Total: -115.11 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -67.66 2.39 -65.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104494506.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.653 kcal (2) G-P(sol) polarization free energy of solvation -67.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds