Wall clock time and date at job start Mon Mar 30 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47267 * 2 1 4 4 C 1.50700 * 109.46737 * 240.00040 * 2 1 3 5 5 H 1.08000 * 119.99473 * 239.99290 * 4 2 1 6 6 C 1.37878 * 120.00268 * 60.00140 * 4 2 1 7 7 N 1.31510 * 119.99667 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99859 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47208 * 59.99758 * 8 6 4 10 10 H 1.48499 * 109.46828 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47080 * 299.99851 * 8 6 4 12 12 N 1.46494 * 109.47268 * 119.99950 * 2 1 3 13 13 C 1.35316 * 126.49827 * 60.00073 * 12 2 1 14 14 N 1.30756 * 108.76821 * 179.97438 * 13 12 2 15 15 C 1.33580 * 109.14777 * 359.97438 * 14 13 12 16 16 C 1.35027 * 107.97635 * 0.05560 * 15 14 13 17 17 C 1.50654 * 124.45388 * 179.89627 * 16 15 14 18 18 C 1.53397 * 108.38075 * 343.60082 * 17 16 15 19 19 C 1.53117 * 109.44783 * 49.63975 * 18 17 16 20 20 C 1.50863 * 128.03202 * 180.15582 * 15 14 13 21 21 H 1.09004 * 109.46740 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46860 * 299.99835 * 1 2 3 23 23 H 1.08999 * 109.46920 * 60.00104 * 1 2 3 24 24 H 0.97005 * 119.99746 * 179.97438 * 7 6 4 25 25 H 1.07994 * 125.61415 * 359.96397 * 13 12 2 26 26 H 1.09006 * 109.68009 * 223.88369 * 17 16 15 27 27 H 1.08994 * 109.68661 * 103.32682 * 17 16 15 28 28 H 1.09011 * 109.47368 * 169.62942 * 18 17 16 29 29 H 1.08999 * 109.47785 * 289.64205 * 18 17 16 30 30 H 1.09003 * 109.46304 * 50.00234 * 19 18 17 31 31 H 1.09010 * 109.46153 * 169.96388 * 19 18 17 32 32 H 1.08999 * 109.67695 * 282.95821 * 20 15 14 33 33 H 1.08998 * 109.67794 * 43.46662 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8268 -0.4200 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1961 13 6 1.7739 -1.9765 1.5393 14 7 2.3773 -2.2319 2.6708 15 6 3.0185 -1.1349 3.0828 16 6 2.8043 -0.1605 2.1730 17 6 3.3582 1.2369 2.2742 18 6 3.8213 1.4703 3.7178 19 6 4.7069 0.3036 4.1641 20 6 3.8497 -0.9571 4.3292 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7087 1.1613 -3.4844 25 1 1.1784 -2.6764 0.9720 26 1 2.5831 1.9586 2.0161 27 1 4.2036 1.3468 1.5951 28 1 4.3894 2.3991 3.7716 29 1 2.9520 1.5376 4.3720 30 1 5.4761 0.1236 3.4130 31 1 5.1789 0.5492 5.1155 32 1 3.1955 -0.8447 5.1937 33 1 4.4945 -1.8249 4.4673 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127320159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:37 Heat of formation + Delta-G solvation = 18.430927 kcal Electronic energy + Delta-G solvation = -15140.479943 eV Core-core repulsion = 12779.363059 eV Total energy + Delta-G solvation = -2361.116884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.03735 -37.63875 -36.56668 -34.17061 -31.77681 -29.97500 -29.51316 -27.46368 -24.40131 -24.04768 -22.70474 -21.05584 -19.62799 -18.56196 -17.61302 -16.46361 -16.27739 -15.58724 -15.32700 -14.73361 -14.69418 -14.54445 -14.09865 -13.62706 -13.34696 -13.13224 -13.00736 -12.80637 -12.58285 -12.43820 -12.25171 -11.78434 -11.67158 -11.59296 -11.39465 -10.74898 -10.59474 -10.14447 -8.87105 -8.32359 -6.49618 1.32729 1.38538 1.40587 1.48427 2.21208 2.27511 2.40714 2.97725 3.66353 3.93150 4.06023 4.07749 4.31358 4.42420 4.51066 4.66542 4.67991 4.74283 4.77412 4.78827 4.92219 5.07974 5.10169 5.20822 5.25667 5.39984 5.45405 5.51555 5.68637 5.77725 5.99991 6.13503 6.40585 6.69541 7.22371 7.33406 8.72408 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038541 B = 0.008201 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.321810 B = 3413.553601 C = 3523.466319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.260 3.740 3 H 0.037 0.963 4 C -0.554 4.554 5 H 0.051 0.949 6 C 0.032 3.968 7 N -0.905 5.905 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.276 1.276 12 N -0.424 5.424 13 C 0.161 3.839 14 N -0.526 5.526 15 C -0.035 4.035 16 C -0.050 4.050 17 C -0.041 4.041 18 C -0.103 4.103 19 C -0.110 4.110 20 C -0.025 4.025 21 H 0.041 0.959 22 H 0.028 0.972 23 H 0.085 0.915 24 H 0.272 0.728 25 H 0.201 0.799 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 1.944 8.810 9.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.159 3.841 3 H 0.054 0.946 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.170 4.170 7 N -0.543 5.543 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.201 1.201 12 N -0.102 5.102 13 C -0.120 4.120 14 N -0.246 5.246 15 C -0.166 4.166 16 C -0.168 4.168 17 C -0.080 4.080 18 C -0.140 4.140 19 C -0.148 4.148 20 C -0.063 4.063 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.104 0.896 24 H 0.081 0.919 25 H 0.218 0.782 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.085 1.399 8.903 9.895 hybrid contribution -0.137 0.146 -1.777 1.788 sum 3.947 1.545 7.126 8.291 Atomic orbital electron populations 1.21944 0.95719 1.00609 1.01177 1.19071 0.92782 0.92399 0.79875 0.94553 1.21337 1.33369 1.13588 0.90852 0.93042 1.25567 0.94470 0.95442 1.01520 1.69923 1.35956 1.23100 1.25295 0.85505 0.78578 0.78838 0.78174 1.19512 1.19953 1.20117 1.45814 1.35141 1.11148 1.18103 1.24834 1.05175 0.86457 0.95558 1.69898 1.14114 1.28926 1.11624 1.21080 1.05426 0.89625 1.00480 1.21553 1.02947 0.99535 0.92763 1.20139 0.99335 0.88625 0.99871 1.21533 1.00183 0.99467 0.92853 1.21578 0.97286 0.93256 1.02663 1.19963 0.95996 0.98967 0.91415 0.94014 0.95247 0.89630 0.91864 0.78230 0.91924 0.91424 0.88652 0.91454 0.92532 0.88128 0.90343 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.31 9.02 71.98 0.65 -5.66 16 2 C 0.26 12.80 2.96 44.25 0.13 12.93 16 3 H 0.04 1.92 7.40 -2.39 -0.02 1.90 16 4 C -0.55 -29.38 8.51 25.60 0.22 -29.16 16 5 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 6 C 0.03 1.65 5.30 84.66 0.45 2.10 16 7 N -0.91 -48.01 11.32 21.45 0.24 -47.76 16 8 Si 0.96 41.56 29.54 68.60 2.03 43.59 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.42 -19.52 2.60 -496.01 -1.29 -20.81 16 13 C 0.16 7.22 11.65 180.10 2.10 9.32 16 14 N -0.53 -23.26 11.25 -187.89 -2.11 -25.38 16 15 C -0.03 -1.39 6.98 41.61 0.29 -1.10 16 16 C -0.05 -2.05 6.73 41.14 0.28 -1.78 16 17 C -0.04 -1.38 5.71 29.97 0.17 -1.21 16 18 C -0.10 -2.46 5.91 30.77 0.18 -2.28 16 19 C -0.11 -2.53 5.89 30.75 0.18 -2.35 16 20 C -0.03 -0.73 6.30 30.01 0.19 -0.54 16 21 H 0.04 1.85 7.95 -2.38 -0.02 1.83 16 22 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.09 4.26 6.07 -2.39 -0.01 4.24 16 24 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 25 H 0.20 8.26 8.06 -2.91 -0.02 8.23 16 26 H 0.06 2.13 7.97 -2.38 -0.02 2.11 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 30 H 0.06 1.39 8.12 -2.39 -0.02 1.38 16 31 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -59.63 269.58 4.78 -54.84 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.08 Total: 15.24 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.84 Total: -19.73 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -3.16 Total: -93.95 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -59.63 4.78 -54.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127320159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.275 kcal (2) G-P(sol) polarization free energy of solvation -59.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds