Wall clock time and date at job start Mon Mar 30 2020 03:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47265 * 2 1 4 4 C 1.50704 * 109.47224 * 239.99774 * 2 1 3 5 5 C 1.38315 * 119.95928 * 20.89092 * 4 2 1 6 6 C 1.38259 * 120.14635 * 179.97438 * 5 4 2 7 7 C 1.38125 * 120.08102 * 0.02562 * 6 5 4 8 8 C 1.38891 * 119.92109 * 359.77864 * 7 6 5 9 9 N 1.39675 * 120.07527 * 180.23112 * 8 7 6 10 10 C 1.38079 * 119.96774 * 200.90428 * 4 2 1 11 11 N 1.46499 * 109.47222 * 120.00530 * 2 1 3 12 12 C 1.46493 * 120.00692 * 63.77104 * 11 2 1 13 13 C 1.36943 * 119.99566 * 243.77257 * 11 2 1 14 14 H 1.08001 * 120.00024 * 351.89618 * 13 11 2 15 15 C 1.38814 * 119.99943 * 171.88649 * 13 11 2 16 16 N 1.31619 * 120.00198 * 5.45309 * 15 13 11 17 17 Si 1.86797 * 120.00176 * 185.44441 * 15 13 11 18 18 H 1.48502 * 109.47001 * 90.00395 * 17 15 13 19 19 H 1.48501 * 109.47482 * 210.00551 * 17 15 13 20 20 H 1.48502 * 109.47199 * 330.00546 * 17 15 13 21 21 H 1.09005 * 109.47248 * 299.99885 * 1 2 3 22 22 H 1.09002 * 109.47375 * 60.00343 * 1 2 3 23 23 H 1.09007 * 109.47090 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.92607 * 359.97438 * 5 4 2 25 25 H 1.08006 * 119.95882 * 180.02562 * 6 5 4 26 26 H 1.07997 * 120.03936 * 180.02562 * 7 6 5 27 27 H 0.97001 * 120.00101 * 180.23070 * 9 8 7 28 28 H 0.96997 * 119.99740 * 0.22248 * 9 8 7 29 29 H 1.07998 * 120.03291 * 359.97438 * 10 4 2 30 30 H 1.08999 * 109.46771 * 3.34834 * 12 11 2 31 31 H 1.09002 * 109.47380 * 123.34270 * 12 11 2 32 32 H 1.08996 * 109.47724 * 243.34837 * 12 11 2 33 33 H 0.96997 * 120.00721 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.2070 -0.8527 -2.3313 6 6 1.6641 -1.5033 -3.4623 7 6 2.9470 -2.0141 -3.4963 8 6 3.7797 -1.8695 -2.3942 9 7 5.0792 -2.3806 -2.4268 10 6 3.3157 -1.2190 -1.2576 11 7 2.0183 -0.6907 1.1961 12 6 1.7339 -2.1150 1.3870 13 6 2.7406 -0.0048 2.1358 14 1 3.0626 1.0068 1.9369 15 6 3.0590 -0.6096 3.3440 16 7 2.7609 -1.8758 3.5449 17 14 3.9106 0.3734 4.6848 18 1 2.8901 1.0092 5.5564 19 1 4.7613 -0.5322 5.4981 20 1 4.7573 1.4247 4.0659 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.2034 -0.4546 -2.3073 25 1 1.0172 -1.6123 -4.3204 26 1 3.3035 -2.5219 -4.3803 27 1 5.6587 -2.2820 -1.6552 28 1 5.4020 -2.8343 -3.2210 29 1 3.9596 -1.1074 -0.3978 30 1 1.2042 -2.4997 0.5155 31 1 2.6702 -2.6589 1.5124 32 1 1.1157 -2.2464 2.2751 33 1 2.9836 -2.2986 4.3890 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147532240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:25 Heat of formation + Delta-G solvation = 36.331424 kcal Electronic energy + Delta-G solvation = -15055.730611 eV Core-core repulsion = 12695.389951 eV Total energy + Delta-G solvation = -2360.340660 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.42345 -37.84987 -35.44801 -33.90751 -31.43109 -30.60718 -28.66086 -28.04266 -25.50663 -23.58503 -22.69979 -20.68257 -18.87818 -17.72175 -17.54094 -16.88350 -16.49780 -15.68410 -15.19982 -14.92928 -14.37156 -14.33288 -14.04146 -13.81041 -13.33153 -12.81896 -12.68158 -12.57877 -12.36473 -12.23499 -12.05819 -11.96990 -11.71218 -11.39147 -11.21366 -10.62241 -9.48244 -8.88714 -8.27958 -7.71201 -5.14601 0.70078 0.89010 1.46149 1.47862 1.55911 2.52130 3.11838 3.15308 3.36879 3.75804 4.07698 4.27235 4.44989 4.55927 4.62905 4.69977 4.84690 4.91426 5.04960 5.15812 5.19524 5.31163 5.45837 5.55379 5.60500 5.66937 5.82163 5.87466 6.05125 6.21131 6.35390 6.71649 7.10017 7.21130 7.94787 8.35165 9.27041 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.008910 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.794865 B = 3141.850093 C = 3605.973505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.197 3.803 3 H 0.066 0.934 4 C -0.054 4.054 5 C -0.187 4.187 6 C -0.076 4.076 7 C -0.212 4.212 8 C 0.200 3.800 9 N -0.874 5.874 10 C -0.193 4.193 11 N -0.611 5.611 12 C 0.205 3.795 13 C -0.248 4.248 14 H 0.076 0.924 15 C -0.063 4.063 16 N -0.947 5.947 17 Si 0.971 3.029 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.271 1.271 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.044 0.956 24 H 0.135 0.865 25 H 0.149 0.851 26 H 0.139 0.861 27 H 0.398 0.602 28 H 0.406 0.594 29 H 0.090 0.910 30 H 0.009 0.991 31 H 0.004 0.996 32 H 0.012 0.988 33 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 0.610 -13.952 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.091 3.909 3 H 0.084 0.916 4 C -0.056 4.056 5 C -0.207 4.207 6 C -0.095 4.095 7 C -0.235 4.235 8 C 0.095 3.905 9 N -0.414 5.414 10 C -0.216 4.216 11 N -0.334 5.334 12 C 0.060 3.940 13 C -0.378 4.378 14 H 0.094 0.906 15 C -0.256 4.256 16 N -0.597 5.597 17 Si 0.800 3.200 18 H -0.214 1.214 19 H -0.224 1.224 20 H -0.196 1.196 21 H 0.060 0.940 22 H 0.101 0.899 23 H 0.063 0.937 24 H 0.153 0.847 25 H 0.166 0.834 26 H 0.157 0.843 27 H 0.226 0.774 28 H 0.236 0.764 29 H 0.108 0.892 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.385 0.538 -13.807 13.822 hybrid contribution 1.024 0.066 1.345 1.692 sum 0.639 0.603 -12.461 12.492 Atomic orbital electron populations 1.22195 0.95722 1.01218 1.01356 1.19479 0.93585 0.94368 0.83503 0.91648 1.20509 0.93293 0.96155 0.95678 1.21115 1.00646 1.05302 0.93662 1.21164 0.95113 0.95300 0.97889 1.20784 0.95427 1.08922 0.98327 1.17965 0.86428 0.92478 0.93615 1.42389 1.11897 1.66234 1.20925 1.20423 0.97709 1.06161 0.97301 1.44185 1.62288 1.06584 1.20337 1.20420 0.96515 0.83104 0.93941 1.19707 1.26170 0.97277 0.94660 0.90590 1.25630 1.02743 0.97248 0.99975 1.70440 1.53976 1.11112 1.24140 0.85192 0.77743 0.77616 0.79465 1.21450 1.22392 1.19593 0.93959 0.89928 0.93673 0.84691 0.83374 0.84283 0.77446 0.76366 0.89158 0.97282 0.97719 0.96943 0.94804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 8.25 71.98 0.59 -4.63 16 2 C 0.20 8.31 3.06 44.24 0.14 8.45 16 3 H 0.07 2.78 7.78 -2.39 -0.02 2.76 16 4 C -0.05 -2.06 4.66 -19.88 -0.09 -2.15 16 5 C -0.19 -5.80 9.12 22.29 0.20 -5.59 16 6 C -0.08 -2.01 10.04 22.25 0.22 -1.79 16 7 C -0.21 -5.77 9.90 22.40 0.22 -5.54 16 8 C 0.20 6.44 6.75 38.21 0.26 6.70 16 9 N -0.87 -22.44 9.09 -51.37 -0.47 -22.91 16 10 C -0.19 -7.68 8.79 22.40 0.20 -7.48 16 11 N -0.61 -31.57 2.11 -707.01 -1.49 -33.06 16 12 C 0.20 10.97 7.76 127.77 0.99 11.96 16 13 C -0.25 -13.93 9.80 84.03 0.82 -13.11 16 14 H 0.08 4.11 7.67 -2.91 -0.02 4.09 16 15 C -0.06 -3.63 5.46 84.86 0.46 -3.17 16 16 N -0.95 -57.47 9.47 21.65 0.21 -57.26 16 17 Si 0.97 46.35 29.56 68.60 2.03 48.38 16 18 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.08 2.32 6.66 -2.39 -0.02 2.30 16 23 H 0.04 1.65 7.36 -2.38 -0.02 1.63 16 24 H 0.14 3.59 5.98 -2.91 -0.02 3.58 16 25 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 26 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.40 10.27 8.84 -92.71 -0.82 9.45 16 28 H 0.41 7.70 8.84 -92.71 -0.82 6.88 16 29 H 0.09 4.22 7.69 -2.91 -0.02 4.20 16 30 H 0.01 0.43 6.85 -2.39 -0.02 0.41 16 31 H 0.00 0.25 7.19 -2.39 -0.02 0.24 16 32 H 0.01 0.72 6.91 -2.39 -0.02 0.70 16 33 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -65.95 269.47 3.77 -62.18 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.52 Total: 19.03 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 4.02 Total: -16.35 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -1.75 Total: -113.23 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -65.95 3.77 -62.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147532240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.507 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds