Wall clock time and date at job start Mon Mar 30 2020 02:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46743 * 2 1 4 4 N 1.46498 * 109.46865 * 180.02562 * 3 2 1 5 5 C 1.39851 * 120.00452 * 180.02562 * 4 3 2 6 6 C 1.39609 * 119.83795 * 0.02562 * 5 4 3 7 7 C 1.38055 * 120.55334 * 179.97438 * 6 5 4 8 8 C 1.38738 * 120.21807 * 0.02562 * 7 6 5 9 9 N 1.38864 * 120.16172 * 179.97438 * 8 7 6 10 10 C 1.41563 * 119.67525 * 359.97438 * 8 7 6 11 11 C 1.41030 * 120.26961 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99162 * 25.46159 * 11 10 8 13 13 C 1.39885 * 120.00149 * 205.46032 * 11 10 8 14 14 N 1.30905 * 119.99833 * 15.17048 * 13 11 10 15 15 Si 1.86799 * 119.99825 * 195.16843 * 13 11 10 16 16 H 1.48501 * 109.47310 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46939 * 120.00106 * 15 13 11 18 18 H 1.48500 * 109.47178 * 240.00082 * 15 13 11 19 19 C 1.38001 * 119.84656 * 179.72306 * 5 4 3 20 20 H 1.08997 * 109.46826 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46738 * 299.99630 * 1 2 3 22 22 H 1.08995 * 109.47486 * 59.99850 * 1 2 3 23 23 H 1.08998 * 109.46738 * 240.00370 * 2 1 3 24 24 H 1.08994 * 109.47047 * 120.00441 * 2 1 3 25 25 H 1.09003 * 109.47789 * 299.99981 * 3 2 1 26 26 H 1.08994 * 109.47527 * 60.00258 * 3 2 1 27 27 H 0.97004 * 120.00179 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.72081 * 359.97198 * 6 5 4 29 29 H 1.07992 * 119.89141 * 180.02562 * 7 6 5 30 30 H 0.96995 * 119.99946 * 359.97438 * 9 8 7 31 31 H 0.96998 * 119.99745 * 180.02562 * 9 8 7 32 32 H 0.97002 * 119.99521 * 180.02562 * 14 13 11 33 33 H 1.08003 * 120.11325 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2043 2.6536 -0.0002 6 6 3.5029 3.8607 0.0014 7 6 4.1783 5.0648 0.0023 8 6 5.5655 5.0873 0.0012 9 7 6.2436 6.2992 0.0017 10 6 6.2862 3.8689 -0.0003 11 6 7.6965 3.8772 -0.0009 12 1 8.2315 4.7244 0.4019 13 6 8.4021 2.7881 -0.5231 14 7 7.7866 1.9070 -1.2705 15 14 10.2226 2.5910 -0.1540 16 1 10.6775 3.7126 0.7066 17 1 10.4483 1.3032 0.5500 18 1 10.9895 2.6011 -1.4256 19 6 5.5843 2.6499 0.0050 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.9900 0.6025 -0.0013 28 1 2.4230 3.8525 0.0018 29 1 3.6250 5.9922 0.0040 30 1 5.7474 7.1326 0.0024 31 1 7.2135 6.3121 0.0005 32 1 8.2759 1.1516 -1.6323 33 1 6.1236 1.7141 0.0083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166373069.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:18 Heat of formation + Delta-G solvation = 8.483729 kcal Electronic energy + Delta-G solvation = -14481.732931 eV Core-core repulsion = 12120.184704 eV Total energy + Delta-G solvation = -2361.548227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.94224 -35.92623 -33.46914 -33.30384 -30.90610 -29.36465 -27.03261 -24.89590 -24.20438 -21.75482 -20.53819 -19.61568 -17.02631 -16.03587 -15.42768 -15.12424 -14.90230 -14.65339 -14.37768 -12.99299 -12.73094 -12.66522 -12.40480 -11.92684 -11.71319 -11.65539 -11.30450 -11.05898 -10.96568 -10.80808 -10.76172 -10.32508 -9.82196 -9.65131 -9.28493 -9.03923 -7.71409 -7.18406 -6.57810 -5.49267 -4.03711 2.92284 3.15400 3.19845 3.33624 3.52052 4.05634 4.49283 4.85169 5.15024 5.15449 5.44721 5.47998 5.80963 5.85587 5.93101 5.94863 6.10914 6.39740 6.41252 6.42253 6.67885 7.15899 7.19489 7.36007 7.53174 7.74532 7.92542 8.04760 8.16589 8.49697 8.80128 8.94632 8.98529 9.03945 9.29512 9.37869 10.40707 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.007811 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.516133 B = 3583.769351 C = 4461.950515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.138 3.862 4 N -0.765 5.765 5 C 0.176 3.824 6 C -0.255 4.255 7 C -0.153 4.153 8 C 0.084 3.916 9 N -0.889 5.889 10 C 0.094 3.906 11 C -0.463 4.463 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.802 5.802 15 Si 0.902 3.098 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.278 1.278 19 C -0.201 4.201 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.387 0.613 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.374 0.626 31 H 0.388 0.612 32 H 0.274 0.726 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -1.897 1.656 6.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.013 3.987 4 N -0.400 5.400 5 C 0.077 3.923 6 C -0.279 4.279 7 C -0.177 4.177 8 C -0.017 4.017 9 N -0.432 5.432 10 C 0.089 3.911 11 C -0.494 4.494 12 H 0.089 0.911 13 C -0.140 4.140 14 N -0.429 5.429 15 Si 0.728 3.272 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.204 1.204 19 C -0.226 4.226 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.220 0.780 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.199 0.801 31 H 0.216 0.784 32 H 0.084 0.916 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.569 -2.115 1.516 7.066 hybrid contribution 1.139 -0.146 0.002 1.148 sum -5.430 -2.262 1.518 6.075 Atomic orbital electron populations 1.21675 0.95443 1.01410 1.01951 1.21707 0.95998 0.97396 1.02234 1.21013 0.82598 0.95197 0.99900 1.44356 1.03354 1.05728 1.86574 1.17544 0.91299 0.84574 0.98852 1.19622 0.96395 0.91108 1.20810 1.19700 0.91956 0.95846 1.10214 1.17862 0.90508 0.86455 1.06881 1.41801 1.08053 1.04123 1.89198 1.16984 0.92807 0.88889 0.92454 1.19168 0.91285 1.02781 1.36194 0.91084 1.25754 1.00122 0.95171 0.92979 1.69894 1.37744 1.11083 1.24136 0.86372 0.82985 0.79045 0.78843 1.18743 1.20057 1.20358 1.20536 0.89857 0.98678 1.13500 0.92814 0.92659 0.92624 0.91752 0.91823 0.93772 0.93783 0.78016 0.89752 0.89795 0.80133 0.78361 0.91564 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.14 -1.73 6.05 -26.73 -0.16 -1.90 16 3 C 0.14 2.27 4.91 -4.04 -0.02 2.25 16 4 N -0.76 -15.37 5.74 -58.64 -0.34 -15.71 16 5 C 0.18 4.26 6.64 -83.77 -0.56 3.70 16 6 C -0.26 -6.03 9.31 -39.14 -0.36 -6.39 16 7 C -0.15 -3.61 9.86 -39.46 -0.39 -4.00 16 8 C 0.08 2.08 6.79 -83.22 -0.56 1.52 16 9 N -0.89 -18.61 8.98 32.75 0.29 -18.31 16 10 C 0.09 2.55 5.58 -106.65 -0.60 1.95 16 11 C -0.46 -12.36 8.50 -37.91 -0.32 -12.69 16 12 H 0.07 1.81 6.67 -52.49 -0.35 1.46 16 13 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 14 N -0.80 -21.28 10.88 55.55 0.60 -20.67 16 15 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 16 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 C -0.20 -5.37 8.50 -38.75 -0.33 -5.70 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.75 7.94 -51.93 -0.41 0.34 16 26 H 0.04 0.73 7.94 -51.93 -0.41 0.32 16 27 H 0.39 7.39 8.48 -40.82 -0.35 7.04 16 28 H 0.08 1.81 6.69 -52.49 -0.35 1.46 16 29 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 31 H 0.39 7.96 7.04 -40.82 -0.29 7.67 16 32 H 0.27 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.12 3.28 6.15 -52.48 -0.32 2.96 16 LS Contribution 274.54 15.07 4.14 4.14 Total: -1.00 -28.80 274.54 -7.87 -36.67 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -4.51 Total: 20.34 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -3.02 Total: -20.59 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.56 Total: -54.69 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.80 -7.87 -36.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166373069.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.156 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds