Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 N 1.46496 * 109.47281 * 120.00384 * 2 1 3 5 5 C 1.39863 * 120.00359 * 155.00156 * 4 2 1 6 6 C 1.39598 * 119.83422 * 0.24106 * 5 4 2 7 7 C 1.38061 * 120.54657 * 180.30415 * 6 5 4 8 8 C 1.38732 * 120.22008 * 359.44915 * 7 6 5 9 9 N 1.38866 * 120.16742 * 180.25266 * 8 7 6 10 10 C 1.41568 * 119.67247 * 0.27948 * 8 7 6 11 11 C 1.41022 * 120.26473 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00645 * 333.62429 * 11 10 8 13 13 C 1.39893 * 120.00115 * 153.62434 * 11 10 8 14 14 N 1.30903 * 119.99515 * 343.98148 * 13 11 10 15 15 Si 1.86794 * 120.00253 * 163.97664 * 13 11 10 16 16 H 1.48505 * 109.47092 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47075 * 120.00155 * 15 13 11 18 18 H 1.48502 * 109.47314 * 240.00196 * 15 13 11 19 19 C 1.38001 * 119.83971 * 179.97438 * 5 4 2 20 20 H 1.08997 * 109.46876 * 299.99619 * 1 2 3 21 21 H 1.08992 * 109.47040 * 60.00012 * 1 2 3 22 22 H 1.09006 * 109.47232 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46750 * 239.99720 * 2 1 3 24 24 H 1.08998 * 109.47096 * 59.99878 * 3 2 1 25 25 H 1.09000 * 109.46992 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46672 * 300.00167 * 3 2 1 27 27 H 0.97002 * 120.00313 * 334.99588 * 4 2 1 28 28 H 1.07999 * 119.73416 * 0.05154 * 6 5 4 29 29 H 1.08003 * 119.89312 * 179.72825 * 7 6 5 30 30 H 0.97003 * 119.99545 * 359.97438 * 9 8 7 31 31 H 0.96996 * 120.00709 * 180.02562 * 9 8 7 32 32 H 0.97004 * 119.99911 * 179.97438 * 14 13 11 33 33 H 1.07994 * 120.11667 * 359.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2864 -1.2807 1.1942 6 6 4.0860 -1.2050 0.0524 7 6 5.3375 -1.7875 0.0323 8 6 5.8192 -2.4462 1.1542 9 7 7.0803 -3.0272 1.1345 10 6 5.0185 -2.5237 2.3191 11 6 5.4960 -3.1898 3.4668 12 1 6.2276 -3.9782 3.3685 13 6 5.0220 -2.8294 4.7327 14 7 4.3913 -1.6941 4.8965 15 14 5.2891 -3.9681 6.1891 16 1 6.0238 -5.1790 5.7425 17 1 6.0819 -3.2642 7.2290 18 1 3.9746 -4.3663 6.7537 19 6 3.7433 -1.9300 2.3230 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.4623 -0.7388 1.9894 28 1 3.7210 -0.6900 -0.8239 29 1 5.9455 -1.7263 -0.8583 30 1 7.6267 -2.9733 0.3348 31 1 7.4147 -3.4875 1.9201 32 1 4.0623 -1.4443 5.7742 33 1 3.1239 -1.9824 3.2061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166373195.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = -5.345816 kcal Electronic energy + Delta-G solvation = -14751.712534 eV Core-core repulsion = 12389.564613 eV Total energy + Delta-G solvation = -2362.147921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83011 -37.71031 -35.32614 -34.46939 -31.57084 -31.24812 -28.04445 -27.69901 -26.48539 -23.30210 -22.02717 -21.11207 -18.90850 -17.81738 -17.25728 -16.76440 -16.40284 -16.02391 -15.23219 -14.57551 -14.25570 -14.12002 -13.83318 -13.48062 -13.22172 -13.03583 -12.96271 -12.77540 -12.61689 -12.32516 -12.05004 -11.82383 -11.65335 -11.31477 -11.10122 -10.93131 -9.37980 -9.12666 -8.49052 -7.27258 -5.99271 1.12572 1.41177 1.51394 1.54880 1.66866 2.27713 2.91573 3.01958 3.78679 3.97542 4.09610 4.33581 4.44286 4.62761 4.81458 4.87218 4.91026 5.00193 5.09020 5.24884 5.30504 5.37992 5.45270 5.49822 5.69994 5.92498 6.08507 6.19311 6.31825 6.58816 6.99152 7.08654 7.16301 7.31483 7.49672 7.68401 8.52211 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.008861 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.934983 B = 3159.161996 C = 3920.336375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.145 3.855 3 C -0.160 4.160 4 N -0.757 5.757 5 C 0.175 3.825 6 C -0.258 4.258 7 C -0.159 4.159 8 C 0.068 3.932 9 N -0.879 5.879 10 C 0.059 3.941 11 C -0.492 4.492 12 H 0.074 0.926 13 C 0.032 3.968 14 N -0.834 5.834 15 Si 0.975 3.025 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.272 1.272 19 C -0.227 4.227 20 H 0.059 0.941 21 H 0.087 0.913 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.387 0.613 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.390 0.610 31 H 0.390 0.610 32 H 0.278 0.722 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 1.900 -5.595 7.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.040 3.960 3 C -0.219 4.219 4 N -0.390 5.390 5 C 0.075 3.925 6 C -0.282 4.282 7 C -0.183 4.183 8 C -0.034 4.034 9 N -0.423 5.423 10 C 0.054 3.946 11 C -0.523 4.523 12 H 0.092 0.908 13 C -0.181 4.181 14 N -0.462 5.462 15 Si 0.797 3.203 16 H -0.182 1.182 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.252 4.252 20 H 0.078 0.922 21 H 0.106 0.894 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.220 0.780 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.218 0.782 31 H 0.218 0.782 32 H 0.089 0.911 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.295 2.154 -5.609 7.386 hybrid contribution 0.348 -0.455 1.178 1.310 sum -3.947 1.699 -4.431 6.173 Atomic orbital electron populations 1.21977 0.93043 1.02287 1.03289 1.20840 0.94817 0.92044 0.88323 1.22235 1.00584 0.96969 1.02096 1.44608 1.15743 1.62956 1.15704 1.17638 0.86287 0.94709 0.93885 1.19958 0.96894 1.13676 0.97659 1.20071 0.97229 1.04393 0.96603 1.18036 0.87979 1.01910 0.95474 1.41675 1.16352 1.66340 1.17960 1.17381 0.91174 0.94161 0.91878 1.19405 1.23520 1.18133 0.91283 0.90843 1.26582 0.93190 0.95615 1.02676 1.69980 1.30893 1.20063 1.25276 0.85270 0.78666 0.79071 0.77270 1.18187 1.19700 1.19680 1.20462 0.97405 1.10306 0.97029 0.92181 0.89381 0.92685 0.91713 0.93176 0.94639 0.90088 0.78030 0.87363 0.87160 0.78218 0.78248 0.91134 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.38 71.98 0.68 -2.71 16 2 C 0.15 4.39 2.87 44.99 0.13 4.52 16 3 C -0.16 -4.54 9.41 71.98 0.68 -3.87 16 4 N -0.76 -29.53 5.25 -318.98 -1.68 -31.20 16 5 C 0.18 8.38 6.63 38.13 0.25 8.63 16 6 C -0.26 -11.71 8.83 22.56 0.20 -11.51 16 7 C -0.16 -7.26 9.86 22.35 0.22 -7.04 16 8 C 0.07 3.36 6.79 38.97 0.26 3.62 16 9 N -0.88 -36.17 8.98 -50.31 -0.45 -36.62 16 10 C 0.06 3.27 5.57 -21.18 -0.12 3.16 16 11 C -0.49 -26.81 8.48 23.35 0.20 -26.61 16 12 H 0.07 3.80 6.71 -2.91 -0.02 3.78 16 13 C 0.03 1.65 5.16 85.23 0.44 2.09 16 14 N -0.83 -45.49 10.97 21.82 0.24 -45.25 16 15 Si 0.97 39.81 29.59 68.60 2.03 41.84 16 16 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 C -0.23 -12.39 8.49 22.81 0.19 -12.20 16 20 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 23 H 0.06 2.04 6.48 -2.38 -0.02 2.02 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.03 1.18 7.66 -2.39 -0.02 1.16 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.39 14.74 8.61 -92.71 -0.80 13.94 16 28 H 0.11 4.35 6.04 -2.91 -0.02 4.33 16 29 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 30 H 0.39 13.23 8.83 -92.71 -0.82 12.41 16 31 H 0.39 15.87 7.05 -92.71 -0.65 15.22 16 32 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 33 H 0.10 5.49 6.23 -2.91 -0.02 5.47 16 Total: -1.00 -61.88 272.26 2.15 -59.74 By element: Atomic # 1 Polarization: 54.53 SS G_CDS: -1.13 Total: 53.40 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 3.13 Total: -41.90 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -1.89 Total: -113.08 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -61.88 2.15 -59.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166373195.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.392 kcal (2) G-P(sol) polarization free energy of solvation -61.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds