Wall clock time and date at job start Mon Mar 30 2020 03:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47053 * 2 1 4 4 C 1.46493 * 119.99675 * 269.99621 * 3 2 1 5 5 C 1.39846 * 119.99957 * 89.99642 * 3 2 1 6 6 C 1.39608 * 119.84184 * 0.02562 * 5 3 2 7 7 C 1.38058 * 120.55013 * 180.02562 * 6 5 3 8 8 C 1.38733 * 120.21785 * 0.25424 * 7 6 5 9 9 N 1.38872 * 120.16201 * 179.74774 * 8 7 6 10 10 C 1.41556 * 119.67562 * 359.52232 * 8 7 6 11 11 C 1.41039 * 120.26894 * 180.20681 * 10 8 7 12 12 H 1.08001 * 119.99638 * 333.96246 * 11 10 8 13 13 C 1.39883 * 120.00195 * 153.96000 * 11 10 8 14 14 N 1.30899 * 119.99956 * 343.94081 * 13 11 10 15 15 Si 1.86796 * 120.00037 * 163.93834 * 13 11 10 16 16 H 1.48500 * 109.47275 * 59.99945 * 15 13 11 17 17 H 1.48499 * 109.47354 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47033 * 300.00132 * 15 13 11 19 19 C 1.38007 * 119.84226 * 180.02562 * 5 3 2 20 20 H 1.09004 * 109.46884 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47721 * 300.00021 * 1 2 3 22 22 H 1.09002 * 109.47022 * 60.00267 * 1 2 3 23 23 H 1.09001 * 109.47558 * 239.99619 * 2 1 3 24 24 H 1.09002 * 109.47022 * 119.99733 * 2 1 3 25 25 H 1.08993 * 109.47344 * 269.99960 * 4 3 2 26 26 H 1.09000 * 109.47274 * 30.00291 * 4 3 2 27 27 H 1.09005 * 109.46775 * 149.99766 * 4 3 2 28 28 H 1.07997 * 119.72520 * 359.97438 * 6 5 3 29 29 H 1.08001 * 119.88677 * 179.97438 * 7 6 5 30 30 H 0.96997 * 119.99642 * 353.92268 * 9 8 7 31 31 H 0.96998 * 120.00405 * 173.92254 * 9 8 7 32 32 H 0.97003 * 120.00018 * 185.03814 * 14 13 11 33 33 H 1.08004 * 120.10942 * 359.97438 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2513 2.0405 1.2111 6 6 2.0179 1.3791 2.4182 7 6 2.2425 2.0161 3.6223 8 6 2.6988 3.3261 3.6447 9 7 2.9194 3.9675 4.8565 10 6 2.9431 4.0041 2.4263 11 6 3.4113 5.3344 2.4346 12 1 3.1982 5.9767 3.2763 13 6 4.1518 5.8221 1.3526 14 7 4.6785 4.9888 0.4914 15 14 4.3888 7.6623 1.1367 16 1 5.0855 8.2146 2.3261 17 1 5.2043 7.9173 -0.0779 18 1 3.0646 8.3181 0.9898 19 6 2.7108 3.3419 1.2073 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.2919 1.9005 -1.5833 26 1 1.5817 1.6876 -2.0284 27 1 2.0954 3.1410 -1.1384 28 1 1.6580 0.3609 2.4100 29 1 2.0580 1.4944 4.5497 30 1 2.6717 3.5327 5.6875 31 1 3.3211 4.8502 4.8721 32 1 5.2523 5.3213 -0.2166 33 1 2.8906 3.8502 0.2715 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166377055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:07 Heat of formation + Delta-G solvation = 9.776354 kcal Electronic energy + Delta-G solvation = -14968.894959 eV Core-core repulsion = 12607.402784 eV Total energy + Delta-G solvation = -2361.492175 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92532 -37.64243 -35.33832 -33.96073 -32.02354 -31.07546 -28.68059 -27.39113 -25.79071 -23.36298 -22.63700 -20.80147 -18.91216 -17.84250 -17.24522 -16.60002 -16.46069 -15.87677 -15.19529 -14.99985 -14.33017 -14.07989 -13.86860 -13.51831 -13.26874 -13.07227 -12.88466 -12.80184 -12.68701 -12.42010 -12.03539 -11.93008 -11.57200 -11.30728 -11.00044 -10.89912 -9.23082 -9.10095 -8.45920 -7.24024 -5.99097 1.14500 1.40980 1.50290 1.53374 1.66205 2.27264 2.70409 2.92857 3.78683 3.97315 4.20048 4.37935 4.48010 4.62041 4.67799 4.82295 4.86847 4.95849 5.00291 5.07433 5.26487 5.40437 5.43569 5.50054 5.63346 5.92975 6.10044 6.15570 6.32726 6.59407 6.90481 7.06020 7.11044 7.19821 7.48700 7.68377 8.52766 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027695 B = 0.010178 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.762188 B = 2750.258592 C = 3590.618250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 N -0.651 5.651 4 C 0.112 3.888 5 C 0.169 3.831 6 C -0.257 4.257 7 C -0.158 4.158 8 C 0.067 3.933 9 N -0.879 5.879 10 C 0.057 3.943 11 C -0.494 4.494 12 H 0.074 0.926 13 C 0.033 3.967 14 N -0.833 5.833 15 Si 0.975 3.025 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.266 1.266 19 C -0.229 4.229 20 H 0.082 0.918 21 H 0.037 0.963 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.390 0.610 31 H 0.389 0.611 32 H 0.279 0.721 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 -4.559 -1.365 6.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.001 3.999 3 N -0.367 5.367 4 C -0.032 4.032 5 C 0.070 3.930 6 C -0.281 4.281 7 C -0.182 4.182 8 C -0.035 4.035 9 N -0.424 5.424 10 C 0.052 3.948 11 C -0.525 4.525 12 H 0.092 0.908 13 C -0.180 4.180 14 N -0.460 5.460 15 Si 0.797 3.203 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.191 1.191 19 C -0.253 4.253 20 H 0.100 0.900 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.218 0.782 31 H 0.217 0.783 32 H 0.089 0.911 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.035 -4.672 -1.827 6.438 hybrid contribution 0.419 1.037 0.175 1.132 sum -3.616 -3.635 -1.652 5.386 Atomic orbital electron populations 1.22144 0.96299 1.02238 1.01220 1.21331 0.94202 0.82209 1.02183 1.46351 1.74324 1.13476 1.02557 1.21317 0.99404 0.96855 0.85580 1.17713 0.97442 0.91939 0.85889 1.19994 1.17337 1.00079 0.90679 1.20070 1.07580 0.93434 0.97124 1.18044 1.05983 0.92507 0.87003 1.41669 1.74583 1.22058 1.04044 1.17415 0.93455 0.93746 0.90153 1.19378 1.32137 0.97064 1.03948 0.90819 1.26576 0.93671 1.03721 0.94006 1.69945 1.24107 1.37788 1.14183 0.85368 0.78795 0.77617 0.78513 1.18494 1.19863 1.19125 1.20693 1.11879 0.94526 0.98208 0.89956 0.94415 0.92995 0.90119 0.91692 0.95309 0.90187 0.94027 0.87131 0.87096 0.78239 0.78266 0.91055 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 10.24 71.98 0.74 -3.54 16 2 C 0.12 3.79 5.87 86.38 0.51 4.30 16 3 N -0.65 -26.02 3.01 -722.22 -2.18 -28.20 16 4 C 0.11 4.11 10.18 127.77 1.30 5.41 16 5 C 0.17 8.18 6.55 38.14 0.25 8.43 16 6 C -0.26 -11.72 9.20 22.56 0.21 -11.51 16 7 C -0.16 -7.23 9.87 22.35 0.22 -7.01 16 8 C 0.07 3.29 6.79 38.96 0.26 3.56 16 9 N -0.88 -36.25 8.97 -50.31 -0.45 -36.70 16 10 C 0.06 3.18 5.57 -21.18 -0.12 3.07 16 11 C -0.49 -26.91 8.44 23.36 0.20 -26.71 16 12 H 0.07 3.80 6.78 -2.91 -0.02 3.78 16 13 C 0.03 1.71 5.16 85.23 0.44 2.15 16 14 N -0.83 -45.10 10.96 21.82 0.24 -44.86 16 15 Si 0.97 39.66 29.59 68.60 2.03 41.69 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 17 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 19 C -0.23 -12.49 7.82 22.81 0.18 -12.32 16 20 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 21 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.08 2.06 8.07 -2.39 -0.02 2.04 16 24 H 0.06 2.03 6.18 -2.39 -0.01 2.02 16 25 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 2.29 8.07 -2.39 -0.02 2.28 16 27 H 0.04 1.72 6.18 -2.38 -0.01 1.70 16 28 H 0.11 4.42 6.11 -2.91 -0.02 4.40 16 29 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.39 13.24 8.84 -92.71 -0.82 12.42 16 31 H 0.39 15.91 7.11 -92.71 -0.66 15.25 16 32 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 33 H 0.11 6.11 4.27 -2.91 -0.01 6.10 16 Total: -1.00 -62.52 270.08 3.48 -59.04 By element: Atomic # 1 Polarization: 43.56 SS G_CDS: -0.35 Total: 43.21 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 4.18 Total: -34.18 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -2.39 Total: -109.76 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -62.52 3.48 -59.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166377055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.812 kcal (2) G-P(sol) polarization free energy of solvation -62.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds