Wall clock time and date at job start Mon Mar 30 2020 03:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00225 * 2 1 4 4 H 1.48501 * 109.47147 * 270.00293 * 3 2 1 5 5 H 1.48500 * 109.47042 * 30.00265 * 3 2 1 6 6 H 1.48505 * 109.46930 * 150.00184 * 3 2 1 7 7 C 1.37874 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00291 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00255 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46991 * 65.00452 * 10 9 7 12 12 C 1.52997 * 109.47592 * 59.99657 * 11 10 9 13 13 C 1.52996 * 109.47165 * 60.00300 * 12 11 10 14 14 C 1.52997 * 109.47131 * 59.99833 * 13 12 11 15 15 C 1.52997 * 109.47232 * 300.00126 * 14 13 12 16 16 C 1.52996 * 109.47165 * 59.99895 * 15 14 13 17 17 C 1.53002 * 109.47415 * 299.99873 * 15 14 13 18 18 C 1.52997 * 109.46817 * 59.99873 * 17 15 14 19 19 C 1.52997 * 109.47232 * 300.00239 * 18 17 15 20 20 H 0.97000 * 119.99505 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46894 * 59.99611 * 9 7 2 22 22 H 1.09001 * 109.46755 * 300.00236 * 9 7 2 23 23 H 1.08993 * 109.47194 * 304.99609 * 10 9 7 24 24 H 1.09002 * 109.46719 * 299.99711 * 11 10 9 25 25 H 1.09001 * 109.47375 * 180.02562 * 12 11 10 26 26 H 1.09000 * 109.47140 * 300.00346 * 12 11 10 27 27 H 1.08992 * 109.47534 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 29 29 H 1.08998 * 109.47533 * 60.00505 * 14 13 12 30 30 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.46993 * 60.00298 * 16 15 14 32 32 H 1.09000 * 109.47380 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.47070 * 300.00053 * 17 15 14 34 34 H 1.08996 * 109.47407 * 179.97438 * 17 15 14 35 35 H 1.09001 * 109.47289 * 180.02562 * 18 17 15 36 36 H 1.09000 * 109.47140 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47230 * 299.99295 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 3.6162 -3.3209 -1.3081 12 6 4.2258 -2.5646 -2.4901 13 6 5.7507 -2.5665 -2.3650 14 6 6.2606 -4.0090 -2.3649 15 6 5.6510 -4.7653 -1.1829 16 6 4.1262 -4.7634 -1.3080 17 6 6.0563 -4.0810 0.1242 18 6 5.5464 -2.6385 0.1241 19 6 6.1560 -1.8822 -1.0579 20 1 -0.4849 0.8401 0.0004 21 1 3.8752 -0.6805 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 3.5872 -3.1755 0.8411 24 1 2.5299 -3.3196 -1.3972 25 1 3.9367 -3.0518 -3.4213 26 1 3.8625 -1.5369 -2.4902 27 1 6.1850 -2.0273 -3.2068 28 1 7.3469 -4.0103 -2.2753 29 1 5.9719 -4.4965 -3.2960 30 1 6.0139 -5.7931 -1.1831 31 1 3.8374 -5.2510 -2.2391 32 1 3.6918 -5.3026 -0.4661 33 1 7.1427 -4.0824 0.2133 34 1 5.6217 -4.6196 0.9663 35 1 5.8355 -2.1509 1.0551 36 1 5.7930 -0.8544 -1.0577 37 1 7.2423 -1.8834 -0.9688 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166654305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:01 Heat of formation + Delta-G solvation = -43.175437 kcal Electronic energy + Delta-G solvation = -16216.996027 eV Core-core repulsion = 13956.748034 eV Total energy + Delta-G solvation = -2260.247993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 220.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97455 -34.03490 -32.19878 -32.13016 -31.86822 -28.39681 -25.39975 -24.83561 -22.13121 -20.93972 -20.87501 -19.60889 -16.82508 -16.52225 -14.62132 -14.38260 -14.15718 -14.01812 -13.64226 -13.04450 -12.83340 -12.74651 -12.47357 -12.04587 -11.84409 -11.77140 -11.32483 -11.07015 -10.64941 -10.45054 -10.42557 -10.32632 -10.06075 -9.78492 -9.54955 -9.37915 -9.03380 -8.85607 -8.72365 -8.44602 -5.98092 -3.93851 3.33340 3.41186 3.45254 4.50275 4.93863 4.96352 4.98014 5.36286 5.54626 5.58643 5.66849 5.71362 5.72696 5.79288 5.84198 5.87458 5.92481 6.11360 6.20171 6.25630 6.30655 6.35458 6.38668 6.46877 6.51567 6.57590 6.66297 6.72395 6.85147 6.96109 7.00412 7.15446 7.25435 7.44918 7.58447 7.89123 8.62642 9.08280 9.65715 11.15538 Molecular weight = 220.15amu Principal moments of inertia in cm(-1) A = 0.041132 B = 0.009846 C = 0.009338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.568518 B = 2843.195954 C = 2997.871536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.065 3.935 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.509 4.509 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.060 4.060 11 C -0.072 4.072 12 C -0.106 4.106 13 C -0.085 4.085 14 C -0.104 4.104 15 C -0.084 4.084 16 C -0.109 4.109 17 C -0.105 4.105 18 C -0.085 4.085 19 C -0.107 4.107 20 H 0.261 0.739 21 H 0.011 0.989 22 H 0.018 0.982 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.668 -7.032 -3.356 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.547 4.547 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.078 4.078 11 C -0.090 4.090 12 C -0.144 4.144 13 C -0.103 4.103 14 C -0.141 4.141 15 C -0.102 4.102 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.144 4.144 20 H 0.071 0.929 21 H 0.029 0.971 22 H 0.036 0.964 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.515 -6.914 -3.353 14.686 hybrid contribution 0.322 0.961 0.011 1.013 sum 12.836 -5.953 -3.342 14.539 Atomic orbital electron populations 1.69922 1.06247 1.26627 1.51842 1.25019 0.94652 0.98974 0.94927 0.86852 0.80466 0.84017 0.78418 1.20421 1.21589 1.19039 1.21171 0.89613 0.94180 1.49765 0.91005 1.19721 0.96899 0.92097 0.96125 1.20959 0.91859 0.98522 0.96472 1.20947 1.00554 0.92501 0.94979 1.21525 0.93710 1.01688 0.97444 1.21028 0.96765 0.95284 0.97231 1.21503 0.98974 0.95905 0.97730 1.21018 0.96227 0.97861 0.95127 1.21593 0.94510 0.97880 1.00687 1.21522 0.99334 0.96474 0.96931 1.21150 0.97115 0.94513 0.97569 1.21530 0.98630 0.99652 0.94595 0.92943 0.97090 0.96356 0.92271 0.90143 0.93278 0.90838 0.92283 0.92874 0.92629 0.92383 0.92900 0.92540 0.93009 0.92444 0.92054 0.91586 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.51 -14.30 8.96 -34.44 -0.31 -14.61 16 8 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 9 C -0.01 -0.27 2.81 -27.88 -0.08 -0.35 16 10 C -0.06 -1.18 1.88 -90.62 -0.17 -1.35 16 11 C -0.07 -1.33 2.53 -90.62 -0.23 -1.55 16 12 C -0.11 -1.85 4.92 -26.73 -0.13 -1.98 16 13 C -0.08 -1.28 3.20 -90.62 -0.29 -1.57 16 14 C -0.10 -1.38 5.19 -26.73 -0.14 -1.52 16 15 C -0.08 -1.16 3.19 -90.62 -0.29 -1.45 16 16 C -0.11 -1.69 5.19 -26.73 -0.14 -1.83 16 17 C -0.11 -1.50 5.19 -26.73 -0.14 -1.64 16 18 C -0.09 -1.42 2.72 -90.62 -0.25 -1.67 16 19 C -0.11 -1.69 4.92 -26.73 -0.13 -1.82 16 20 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 21 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 22 H 0.02 0.43 4.26 -51.93 -0.22 0.21 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.08 1.71 6.95 -51.93 -0.36 1.35 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.45 6.32 -51.93 -0.33 1.12 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.14 6.55 -51.93 -0.34 0.80 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 262.95 15.07 3.96 3.96 Total: -1.00 -29.33 262.95 -8.57 -37.90 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -6.25 Total: -2.26 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: -2.39 Total: -29.56 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.77 Total: -27.31 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.33 -8.57 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166654305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.275 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds