Wall clock time and date at job start Mon Mar 30 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00225 * 2 1 4 4 H 1.48501 * 109.47147 * 270.00293 * 3 2 1 5 5 H 1.48500 * 109.47042 * 30.00265 * 3 2 1 6 6 H 1.48505 * 109.46930 * 150.00184 * 3 2 1 7 7 C 1.37874 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00291 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00255 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46991 * 65.00452 * 10 9 7 12 12 C 1.52997 * 109.47592 * 59.99657 * 11 10 9 13 13 C 1.52996 * 109.47165 * 60.00300 * 12 11 10 14 14 C 1.52997 * 109.47131 * 59.99833 * 13 12 11 15 15 C 1.52997 * 109.47232 * 300.00126 * 14 13 12 16 16 C 1.52996 * 109.47165 * 59.99895 * 15 14 13 17 17 C 1.53002 * 109.47415 * 299.99873 * 15 14 13 18 18 C 1.52997 * 109.46817 * 59.99873 * 17 15 14 19 19 C 1.52997 * 109.47232 * 300.00239 * 18 17 15 20 20 H 0.97000 * 119.99505 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46894 * 59.99611 * 9 7 2 22 22 H 1.09001 * 109.46755 * 300.00236 * 9 7 2 23 23 H 1.08993 * 109.47194 * 304.99609 * 10 9 7 24 24 H 1.09002 * 109.46719 * 299.99711 * 11 10 9 25 25 H 1.09001 * 109.47375 * 180.02562 * 12 11 10 26 26 H 1.09000 * 109.47140 * 300.00346 * 12 11 10 27 27 H 1.08992 * 109.47534 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 29 29 H 1.08998 * 109.47533 * 60.00505 * 14 13 12 30 30 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.46993 * 60.00298 * 16 15 14 32 32 H 1.09000 * 109.47380 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.47070 * 300.00053 * 17 15 14 34 34 H 1.08996 * 109.47407 * 179.97438 * 17 15 14 35 35 H 1.09001 * 109.47289 * 180.02562 * 18 17 15 36 36 H 1.09000 * 109.47140 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47230 * 299.99295 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 3.6162 -3.3209 -1.3081 12 6 4.2258 -2.5646 -2.4901 13 6 5.7507 -2.5665 -2.3650 14 6 6.2606 -4.0090 -2.3649 15 6 5.6510 -4.7653 -1.1829 16 6 4.1262 -4.7634 -1.3080 17 6 6.0563 -4.0810 0.1242 18 6 5.5464 -2.6385 0.1241 19 6 6.1560 -1.8822 -1.0579 20 1 -0.4849 0.8401 0.0004 21 1 3.8752 -0.6805 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 3.5872 -3.1755 0.8411 24 1 2.5299 -3.3196 -1.3972 25 1 3.9367 -3.0518 -3.4213 26 1 3.8625 -1.5369 -2.4902 27 1 6.1850 -2.0273 -3.2068 28 1 7.3469 -4.0103 -2.2753 29 1 5.9719 -4.4965 -3.2960 30 1 6.0139 -5.7931 -1.1831 31 1 3.8374 -5.2510 -2.2391 32 1 3.6918 -5.3026 -0.4661 33 1 7.1427 -4.0824 0.2133 34 1 5.6217 -4.6196 0.9663 35 1 5.8355 -2.1509 1.0551 36 1 5.7930 -0.8544 -1.0577 37 1 7.2423 -1.8834 -0.9688 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166654305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:00 Heat of formation + Delta-G solvation = -58.991576 kcal Electronic energy + Delta-G solvation = -16217.681867 eV Core-core repulsion = 13956.748034 eV Total energy + Delta-G solvation = -2260.933832 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 220.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.28427 -35.80672 -33.93412 -33.38545 -33.38102 -30.15393 -26.65107 -26.45026 -23.85657 -22.24160 -22.16687 -21.09807 -18.86136 -18.01058 -16.33750 -15.88242 -15.77456 -15.27011 -15.05476 -14.56949 -14.43150 -14.06234 -13.97076 -13.52514 -13.29750 -13.13122 -13.04216 -12.71236 -12.31128 -11.96463 -11.65790 -11.65151 -11.60176 -11.46235 -11.29436 -11.14896 -10.74637 -10.36745 -10.27565 -10.22343 -8.26989 -6.27745 1.31986 1.33881 1.45921 2.35718 3.08327 3.72926 3.73576 3.77291 4.32802 4.34028 4.43130 4.46037 4.46424 4.56612 4.57545 4.61803 4.65421 4.90605 4.92202 4.94800 4.98698 5.09935 5.19481 5.22927 5.25284 5.26134 5.31362 5.32714 5.44636 5.46963 5.54254 5.63629 5.73413 5.78400 5.86074 5.89388 6.35575 6.79297 7.35145 8.90111 Molecular weight = 220.15amu Principal moments of inertia in cm(-1) A = 0.041132 B = 0.009846 C = 0.009338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.568518 B = 2843.195954 C = 2997.871536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.513 4.513 8 H 0.030 0.970 9 C -0.004 4.004 10 C -0.060 4.060 11 C -0.073 4.073 12 C -0.106 4.106 13 C -0.083 4.083 14 C -0.099 4.099 15 C -0.081 4.081 16 C -0.106 4.106 17 C -0.102 4.102 18 C -0.084 4.084 19 C -0.108 4.108 20 H 0.263 0.737 21 H 0.006 0.994 22 H 0.024 0.976 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.323 -7.439 -4.097 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.551 4.551 8 H 0.048 0.952 9 C -0.042 4.042 10 C -0.079 4.079 11 C -0.091 4.091 12 C -0.144 4.144 13 C -0.101 4.101 14 C -0.136 4.136 15 C -0.100 4.100 16 C -0.143 4.143 17 C -0.139 4.139 18 C -0.102 4.102 19 C -0.145 4.145 20 H 0.072 0.928 21 H 0.024 0.976 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.184 -7.335 -4.093 18.235 hybrid contribution -0.946 1.029 0.257 1.421 sum 15.239 -6.307 -3.836 16.932 Atomic orbital electron populations 1.70081 1.08187 1.27788 1.53590 1.25967 0.95532 1.03231 0.94696 0.85750 0.79554 0.78822 0.79127 1.19227 1.21101 1.17270 1.21467 0.92151 0.92627 1.48822 0.95210 1.19641 0.93638 0.95041 0.95832 1.20893 0.94857 0.95678 0.96423 1.20860 0.97953 0.95271 0.95028 1.21496 0.96181 0.99455 0.97226 1.21047 0.94260 0.97295 0.97492 1.21501 1.00341 0.93916 0.97863 1.21057 0.94108 0.99589 0.95210 1.21557 0.96571 0.95068 1.01148 1.21517 1.00898 0.94218 0.97287 1.21117 0.93942 0.96985 0.98176 1.21552 1.00299 0.98266 0.94368 0.92783 0.97612 0.95746 0.94517 0.94905 0.92177 0.94145 0.90577 0.90287 0.91459 0.89605 0.91712 0.93119 0.90193 0.92652 0.92246 0.93703 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.68 13.96 21.45 0.30 -61.38 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.94 45.93 27.47 68.60 1.88 47.81 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.25 -11.36 6.54 99.48 0.65 -10.70 16 7 C -0.51 -30.38 8.96 25.60 0.23 -30.15 16 8 H 0.03 1.95 7.30 -2.91 -0.02 1.93 16 9 C 0.00 -0.21 2.81 29.85 0.08 -0.13 16 10 C -0.06 -2.43 1.88 -10.79 -0.02 -2.45 16 11 C -0.07 -2.76 2.53 -10.80 -0.03 -2.79 16 12 C -0.11 -3.65 4.92 30.59 0.15 -3.50 16 13 C -0.08 -2.23 3.20 -10.79 -0.03 -2.26 16 14 C -0.10 -2.14 5.19 30.59 0.16 -1.98 16 15 C -0.08 -1.92 3.19 -10.80 -0.03 -1.95 16 16 C -0.11 -3.14 5.19 30.59 0.16 -2.98 16 17 C -0.10 -2.54 5.19 30.59 0.16 -2.38 16 18 C -0.08 -2.63 2.72 -10.79 -0.03 -2.66 16 19 C -0.11 -3.08 4.92 30.59 0.15 -2.93 16 20 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 21 H 0.01 0.27 7.20 -2.39 -0.02 0.26 16 22 H 0.02 1.16 4.26 -2.39 -0.01 1.15 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.03 1.51 6.95 -2.39 -0.02 1.50 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.04 1.62 6.32 -2.39 -0.02 1.61 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.46 6.55 -2.39 -0.02 1.44 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -66.57 262.95 4.56 -62.01 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.97 Total: 7.16 kcal Atomic # 6 Polarization: -57.01 SS G_CDS: 1.41 Total: -55.61 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.30 Total: -61.38 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -66.57 4.56 -62.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166654305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.022 kcal (2) G-P(sol) polarization free energy of solvation -66.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds