Wall clock time and date at job start Mon Mar 30 2020 03:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47009 * 2 1 4 4 C 1.50698 * 109.47158 * 239.99921 * 2 1 3 5 5 H 1.08001 * 120.00348 * 245.59970 * 4 2 1 6 6 C 1.37878 * 119.99915 * 65.60153 * 4 2 1 7 7 N 1.31516 * 119.99848 * 9.37208 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 189.37588 * 6 4 2 9 9 H 1.48501 * 109.46922 * 84.99218 * 8 6 4 10 10 H 1.48501 * 109.47172 * 204.99348 * 8 6 4 11 11 H 1.48502 * 109.46930 * 324.99643 * 8 6 4 12 12 C 1.50700 * 109.46920 * 120.00427 * 2 1 3 13 13 C 1.38063 * 119.57607 * 34.99456 * 12 2 1 14 14 C 1.38841 * 119.32947 * 180.02562 * 13 12 2 15 15 C 1.38342 * 118.50631 * 0.02562 * 14 13 12 16 16 C 1.39098 * 119.09718 * 359.97438 * 15 14 13 17 17 N 1.39005 * 119.70361 * 180.02562 * 16 15 14 18 18 C 1.46496 * 120.00351 * 5.00283 * 17 16 15 19 19 C 1.46503 * 119.99870 * 185.00311 * 17 16 15 20 20 N 1.31950 * 119.56961 * 214.73243 * 12 2 1 21 21 H 1.08994 * 109.46886 * 60.53047 * 1 2 3 22 22 H 1.08995 * 109.46870 * 180.52766 * 1 2 3 23 23 H 1.09001 * 109.46877 * 300.53134 * 1 2 3 24 24 H 0.97002 * 120.00369 * 179.97438 * 7 6 4 25 25 H 1.07995 * 120.33750 * 0.02789 * 13 12 2 26 26 H 1.07993 * 120.74811 * 180.02562 * 14 13 12 27 27 H 1.07992 * 120.45600 * 179.97438 * 15 14 13 28 28 H 1.08999 * 109.47085 * 59.99808 * 18 17 16 29 29 H 1.08997 * 109.47672 * 179.97438 * 18 17 16 30 30 H 1.08999 * 109.47081 * 300.00075 * 18 17 16 31 31 H 1.08994 * 109.47350 * 89.99674 * 19 17 16 32 32 H 1.08996 * 109.47285 * 210.00446 * 19 17 16 33 33 H 1.09010 * 109.47242 * 330.00085 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5767 -1.6382 -1.1340 6 6 1.7972 -0.1759 -2.4794 7 7 1.3010 1.0368 -2.5928 8 14 2.1831 -1.1741 -4.0105 9 1 1.0326 -2.0576 -4.3283 10 1 2.4317 -0.2556 -5.1506 11 1 3.3917 -2.0026 -3.7695 12 6 2.0324 -0.7105 1.2304 13 6 1.3321 -1.7921 1.7264 14 6 1.7992 -2.4425 2.8606 15 6 2.9580 -1.9792 3.4573 16 6 3.6126 -0.8838 2.9036 17 7 4.7784 -0.4080 3.4927 18 6 5.3725 -1.1242 4.6241 19 6 5.4129 0.8097 2.9819 20 7 3.1386 -0.2941 1.8168 21 1 -0.3633 0.5055 -0.8947 22 1 -0.3633 -1.0276 0.0095 23 1 -0.3633 0.5221 0.8852 24 1 1.1358 1.4131 -3.4715 25 1 0.4302 -2.1288 1.2370 26 1 1.2697 -3.2911 3.2678 27 1 3.3492 -2.4612 4.3410 28 1 5.6271 -2.1390 4.3185 29 1 6.2746 -0.6059 4.9491 30 1 4.6580 -1.1609 5.4465 31 1 5.0108 1.6764 3.5064 32 1 6.4893 0.7540 3.1441 33 1 5.2108 0.9047 1.9149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167420950.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:32 Heat of formation + Delta-G solvation = 39.993404 kcal Electronic energy + Delta-G solvation = -14757.633257 eV Core-core repulsion = 12397.451393 eV Total energy + Delta-G solvation = -2360.181865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62307 -36.38880 -34.01438 -31.76628 -31.10135 -28.54125 -27.69725 -25.18724 -24.58008 -22.88926 -21.20225 -19.54509 -16.75218 -16.10926 -15.87472 -15.01604 -14.91717 -14.60235 -13.87271 -13.40800 -13.03482 -12.51341 -12.44584 -12.27548 -12.02477 -11.63507 -11.57474 -11.16498 -10.86977 -10.75993 -10.41335 -10.06823 -9.76160 -9.46668 -9.25536 -8.57367 -8.42209 -8.25796 -6.99908 -6.00045 -4.01688 2.09501 2.20156 3.33815 3.34596 3.39733 3.43808 4.44475 4.75836 5.06031 5.24787 5.33692 5.45133 5.47760 5.59969 5.70003 5.83298 5.91540 5.95522 6.06002 6.29085 6.55984 6.70834 6.78999 6.94970 7.01730 7.13730 7.35595 7.45000 7.70232 7.89816 7.94714 8.00255 8.38637 8.99101 9.07534 9.59957 11.08930 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032991 B = 0.007884 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.500295 B = 3550.689993 C = 3828.133491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.080 3.920 3 H 0.054 0.946 4 C -0.502 4.502 5 H 0.054 0.946 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.225 3.775 13 C -0.232 4.232 14 C -0.044 4.044 15 C -0.268 4.268 16 C 0.392 3.608 17 N -0.627 5.627 18 C 0.106 3.894 19 C 0.102 3.898 20 N -0.537 5.537 21 H 0.070 0.930 22 H 0.035 0.965 23 H 0.015 0.985 24 H 0.261 0.739 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -3.920 11.769 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.061 3.939 3 H 0.072 0.928 4 C -0.541 4.541 5 H 0.073 0.927 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.720 3.280 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.087 3.913 13 C -0.254 4.254 14 C -0.070 4.070 15 C -0.292 4.292 16 C 0.159 3.841 17 N -0.344 5.344 18 C -0.038 4.038 19 C -0.041 4.041 20 N -0.254 5.254 21 H 0.089 0.911 22 H 0.054 0.946 23 H 0.034 0.966 24 H 0.071 0.929 25 H 0.148 0.852 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.771 -3.013 11.374 12.697 hybrid contribution -0.150 -1.300 -0.448 1.383 sum 4.621 -4.313 10.927 12.623 Atomic orbital electron populations 1.21800 0.97775 0.99248 0.99836 1.17859 0.92050 0.96779 0.87236 0.92832 1.20867 1.35904 1.07690 0.89603 0.92730 1.24904 0.95278 0.94638 0.98812 1.69968 1.44977 1.13837 1.23779 0.86609 0.78759 0.80084 0.82593 1.20490 1.21267 1.20028 1.21871 0.86175 0.90340 0.92909 1.21785 1.04189 1.00156 0.99225 1.21196 0.94127 0.97346 0.94336 1.21097 1.00701 1.02349 1.05099 1.18355 0.86613 0.89702 0.89458 1.46049 1.25234 1.28279 1.34799 1.21501 0.97594 0.96589 0.88082 1.21516 0.95531 0.85540 1.01551 1.67122 1.15658 1.33621 1.09003 0.91123 0.94585 0.96609 0.92895 0.85227 0.86173 0.86531 0.93122 0.91041 0.93127 0.94142 0.92705 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.48 37.16 0.31 -2.74 16 2 C 0.08 2.09 2.48 -92.92 -0.23 1.86 16 3 H 0.05 1.56 8.08 -51.93 -0.42 1.14 16 4 C -0.50 -14.16 8.46 -34.44 -0.29 -14.46 16 5 H 0.05 1.57 7.76 -52.49 -0.41 1.16 16 6 C 0.07 1.84 5.20 -17.82 -0.09 1.75 16 7 N -0.89 -25.69 12.16 55.43 0.67 -25.01 16 8 Si 0.89 21.61 29.55 -169.99 -5.02 16.59 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.23 5.32 5.73 -82.61 -0.47 4.84 16 13 C -0.23 -4.76 9.17 -39.42 -0.36 -5.12 16 14 C -0.04 -0.77 10.17 -39.32 -0.40 -1.17 16 15 C -0.27 -4.64 9.34 -39.22 -0.37 -5.01 16 16 C 0.39 7.67 7.37 -155.01 -1.14 6.53 16 17 N -0.63 -10.10 3.39 -189.67 -0.64 -10.75 16 18 C 0.11 1.20 9.40 59.84 0.56 1.77 16 19 C 0.10 1.51 10.47 59.85 0.63 2.14 16 20 N -0.54 -12.40 8.99 -8.67 -0.08 -12.47 16 21 H 0.07 1.81 6.90 -51.93 -0.36 1.46 16 22 H 0.04 0.79 6.46 -51.93 -0.34 0.45 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.13 2.53 6.28 -52.49 -0.33 2.20 16 26 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 27 H 0.12 1.65 6.71 -52.49 -0.35 1.30 16 28 H 0.05 0.55 8.11 -51.93 -0.42 0.13 16 29 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16 30 H 0.05 0.53 7.73 -51.93 -0.40 0.12 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.64 7.92 -51.93 -0.41 0.23 16 33 H 0.08 1.49 7.30 -51.92 -0.38 1.11 16 LS Contribution 275.37 15.07 4.15 4.15 Total: -1.00 -31.02 275.37 -7.40 -38.42 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.62 Total: -1.32 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.85 Total: -9.61 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.05 Total: -48.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.02 -7.40 -38.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167420950.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.412 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds