Wall clock time and date at job start Mon Mar 30 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39675 * 110.99733 * 236.04385 * 2 1 3 5 5 C 1.38938 * 120.07021 * 59.73058 * 4 2 1 6 6 C 1.38091 * 119.92166 * 179.78704 * 5 4 2 7 7 C 1.38305 * 120.07311 * 0.48578 * 6 5 4 8 8 C 1.38268 * 120.15464 * 359.74254 * 7 6 5 9 9 C 1.38128 * 120.06810 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.03308 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47172 * 219.97797 * 10 9 8 12 12 N 1.46895 * 109.47269 * 339.98395 * 10 9 8 13 13 C 1.50705 * 109.46661 * 99.97895 * 10 9 8 14 14 H 1.07994 * 120.00184 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99869 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99962 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00011 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.47114 * 89.99980 * 17 15 13 19 19 H 1.48498 * 109.47099 * 209.99666 * 17 15 13 20 20 H 1.48493 * 109.47324 * 329.99947 * 17 15 13 21 21 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 22 22 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 23 23 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 24 24 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 25 25 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 26 26 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 27 27 H 1.08000 * 120.03850 * 359.97438 * 5 4 2 28 28 H 1.07994 * 119.96089 * 180.24606 * 6 5 4 29 29 H 1.08001 * 119.92551 * 179.76888 * 7 6 5 30 30 H 1.07992 * 119.96268 * 180.02562 * 8 7 6 31 31 H 1.00902 * 111.00303 * 59.99787 * 12 10 9 32 32 H 1.00906 * 111.00126 * 183.95147 * 12 10 9 33 33 H 0.97002 * 120.00081 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9695 -0.7284 -1.0816 5 6 1.6531 -0.3513 -2.3809 6 6 2.1532 -1.0710 -3.4481 7 6 2.9599 -2.1719 -3.2245 8 6 3.2729 -2.5527 -1.9326 9 6 2.7799 -1.8344 -0.8607 10 6 3.1211 -2.2505 0.5470 11 1 2.2418 -2.1403 1.1816 12 7 3.5554 -3.6538 0.5512 13 6 4.2325 -1.3791 1.0728 14 1 4.6498 -0.6016 0.4502 15 6 4.7160 -1.5739 2.3493 16 7 4.2076 -2.5204 3.1077 17 14 6.0932 -0.4934 3.0014 18 1 5.5127 0.6985 3.6705 19 1 6.9056 -1.2625 3.9779 20 1 6.9560 -0.0572 1.8744 21 1 -0.3634 -1.0252 0.0708 22 1 -0.3633 0.4513 -0.9233 23 1 -0.3633 0.5740 0.8525 24 1 1.5899 1.9163 0.8525 25 1 3.0829 1.3431 0.0709 26 1 1.7045 1.8723 -0.9233 27 1 1.0193 0.5054 -2.5561 28 1 1.9109 -0.7761 -4.4584 29 1 3.3467 -2.7353 -4.0608 30 1 3.9034 -3.4126 -1.7616 31 1 4.3698 -3.7820 -0.0305 32 1 3.7283 -3.9760 1.4916 33 1 4.5475 -2.6572 4.0059 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211770887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:06 Heat of formation + Delta-G solvation = 18.005398 kcal Electronic energy + Delta-G solvation = -15251.826626 eV Core-core repulsion = 12890.691289 eV Total energy + Delta-G solvation = -2361.135336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77707 -37.38941 -36.38059 -33.47104 -30.72663 -30.64802 -28.43389 -27.82566 -25.29653 -24.61721 -21.83241 -21.28946 -18.48138 -17.97978 -16.84576 -16.47087 -16.06856 -15.79663 -15.54381 -14.87002 -14.74349 -14.37765 -13.72188 -13.48714 -13.20493 -13.14166 -12.92991 -12.78764 -12.72547 -12.53692 -12.41466 -11.92787 -11.74244 -11.35112 -10.62313 -9.54341 -9.35249 -9.13170 -9.04962 -8.01543 -6.22859 0.56659 0.72740 1.37616 1.39421 1.48437 2.41550 3.04037 3.13927 3.17291 4.15235 4.21157 4.32461 4.37349 4.42927 4.54737 4.59438 4.65748 4.90426 4.93270 4.96762 5.00498 5.08317 5.24606 5.55663 5.64631 5.71244 5.80568 6.01055 6.11482 6.20587 6.26370 6.73024 6.78265 7.03002 7.18862 7.49137 8.93484 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.026827 B = 0.011005 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.474288 B = 2543.767055 C = 2961.528611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.522 5.522 3 C 0.043 3.957 4 C 0.069 3.931 5 C -0.156 4.156 6 C -0.130 4.130 7 C -0.126 4.126 8 C -0.125 4.125 9 C -0.047 4.047 10 C 0.259 3.741 11 H 0.017 0.983 12 N -0.847 5.847 13 C -0.523 4.523 14 H 0.036 0.964 15 C 0.020 3.980 16 N -0.920 5.920 17 Si 0.951 3.049 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.274 1.274 21 H 0.052 0.948 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.131 0.869 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.121 0.879 31 H 0.315 0.685 32 H 0.344 0.656 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 4.918 -9.921 11.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.243 5.243 3 C -0.103 4.103 4 C -0.025 4.025 5 C -0.176 4.176 6 C -0.148 4.148 7 C -0.144 4.144 8 C -0.144 4.144 9 C -0.049 4.049 10 C 0.149 3.851 11 H 0.035 0.965 12 N -0.376 5.376 13 C -0.563 4.563 14 H 0.054 0.946 15 C -0.178 4.178 16 N -0.561 5.561 17 Si 0.778 3.222 18 H -0.205 1.205 19 H -0.208 1.208 20 H -0.199 1.199 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.148 0.852 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.924 4.471 -9.594 11.673 hybrid contribution 1.388 1.184 0.657 1.939 sum -3.536 5.655 -8.937 11.151 Atomic orbital electron populations 1.22394 0.85610 1.01811 1.01319 1.59257 1.08532 1.14377 1.42134 1.22276 1.00009 0.87149 1.00876 1.18772 0.98781 0.95598 0.89357 1.21689 1.02073 1.01227 0.92636 1.21200 0.98562 0.95867 0.99208 1.21409 0.98845 0.97719 0.96423 1.21105 1.00784 1.00099 0.92444 1.20392 0.94179 0.93533 0.96747 1.17507 0.93886 0.85557 0.88170 0.96544 1.59587 1.39115 1.21584 1.17328 1.21753 1.18475 1.17052 0.98985 0.94580 1.25627 0.98869 0.96597 0.96756 1.69847 1.43439 1.33234 1.09549 0.85671 0.79540 0.79039 0.77983 1.20490 1.20845 1.19927 0.92910 0.93981 0.90230 0.90433 0.93570 0.94159 0.85156 0.83420 0.83737 0.86083 0.87440 0.84205 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.11 9.34 127.69 1.19 2.30 16 2 N -0.52 -20.41 4.13 -745.07 -3.08 -23.48 16 3 C 0.04 1.48 9.39 127.69 1.20 2.68 16 4 C 0.07 2.77 4.70 38.21 0.18 2.95 16 5 C -0.16 -5.05 8.57 22.40 0.19 -4.86 16 6 C -0.13 -3.74 10.04 22.25 0.22 -3.51 16 7 C -0.13 -3.93 10.04 22.29 0.22 -3.70 16 8 C -0.13 -4.92 9.25 22.25 0.21 -4.72 16 9 C -0.05 -2.12 5.04 -19.73 -0.10 -2.22 16 10 C 0.26 13.56 2.57 43.43 0.11 13.67 16 11 H 0.02 1.00 7.80 -2.39 -0.02 0.98 16 12 N -0.85 -42.22 8.67 -174.96 -1.52 -43.73 16 13 C -0.52 -28.99 8.71 25.60 0.22 -28.77 16 14 H 0.04 2.05 7.74 -2.91 -0.02 2.03 16 15 C 0.02 1.12 5.38 84.66 0.46 1.58 16 16 N -0.92 -52.53 11.54 21.45 0.25 -52.29 16 17 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.04 1.11 7.11 -2.39 -0.02 1.09 16 23 H 0.08 2.22 8.12 -2.38 -0.02 2.20 16 24 H 0.08 2.36 8.12 -2.38 -0.02 2.34 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.04 1.15 7.36 -2.39 -0.02 1.13 16 27 H 0.13 3.53 7.02 -2.91 -0.02 3.51 16 28 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 29 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.12 4.67 6.25 -2.91 -0.02 4.65 16 31 H 0.32 14.75 7.28 -89.69 -0.65 14.10 16 32 H 0.34 18.41 7.08 -89.69 -0.63 17.78 16 33 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -62.13 272.80 1.61 -60.52 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.18 Total: 37.35 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 4.11 Total: -24.61 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -4.35 Total: -119.50 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -62.13 1.61 -60.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211770887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.530 kcal (2) G-P(sol) polarization free energy of solvation -62.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds