Wall clock time and date at job start Mon Mar 30 2020 03:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39883 * 125.67979 * 2 1 4 4 C 1.30315 * 109.23235 * 180.02562 * 3 2 1 5 5 C 1.41881 * 108.04956 * 0.02562 * 4 3 2 6 6 C 1.41592 * 126.56176 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00782 * 170.78140 * 6 5 4 8 8 C 1.39698 * 119.99881 * 350.78222 * 6 5 4 9 9 N 1.31036 * 119.99915 * 6.64211 * 8 6 5 10 10 Si 1.86801 * 120.00358 * 186.64412 * 8 6 5 11 11 H 1.48503 * 109.47131 * 94.98093 * 10 8 6 12 12 H 1.48497 * 109.47208 * 214.98109 * 10 8 6 13 13 H 1.48503 * 109.46863 * 334.98415 * 10 8 6 14 14 C 1.34506 * 125.67468 * 180.02562 * 2 1 3 15 15 C 1.50697 * 126.40384 * 359.96357 * 14 2 1 16 16 C 1.54269 * 110.02944 * 237.71680 * 15 14 2 17 17 C 1.54964 * 104.16280 * 217.13964 * 16 15 14 18 18 C 1.54894 * 102.77661 * 37.88565 * 17 16 15 19 19 C 1.53879 * 110.03235 * 120.50329 * 15 14 2 20 20 H 1.08992 * 109.47262 * 95.19385 * 1 2 3 21 21 H 1.09002 * 109.47316 * 215.20311 * 1 2 3 22 22 H 1.09003 * 109.46646 * 335.19691 * 1 2 3 23 23 H 1.08002 * 125.97466 * 179.97438 * 4 3 2 24 24 H 0.96998 * 119.99998 * 179.97438 * 9 8 6 25 25 H 1.08991 * 110.01942 * 359.10238 * 15 14 2 26 26 H 1.09009 * 110.48827 * 335.78480 * 16 15 14 27 27 H 1.09001 * 110.48901 * 98.42441 * 16 15 14 28 28 H 1.09002 * 110.71670 * 279.57460 * 17 16 15 29 29 H 1.08993 * 110.92896 * 156.29832 * 17 16 15 30 30 H 1.09003 * 110.48214 * 203.41378 * 18 17 16 31 31 H 1.08999 * 110.60035 * 80.82055 * 18 17 16 32 32 H 1.08996 * 110.02709 * 238.56520 * 19 15 14 33 33 H 1.08993 * 110.02914 * 359.94428 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2809 1.1363 0.0000 4 6 3.5307 0.7673 -0.0006 5 6 3.5704 -0.6510 -0.0015 6 6 4.7308 -1.4623 -0.0019 7 1 4.6444 -2.5285 0.1472 8 6 5.9875 -0.8836 -0.1950 9 7 6.1077 0.4202 -0.2457 10 14 7.4968 -1.9685 -0.3811 11 1 7.7705 -2.1927 -1.8234 12 1 8.6659 -1.3022 0.2469 13 1 7.2537 -3.2733 0.2852 14 6 2.2494 -1.0926 -0.0005 15 6 1.7857 -2.5265 -0.0004 16 6 2.3603 -3.2675 1.2246 17 6 2.6761 -4.6889 0.6942 18 6 3.2033 -4.4116 -0.7356 19 6 2.3210 -3.2537 -1.2463 20 1 -0.3633 -0.0930 -1.0234 21 1 -0.3634 -0.8397 0.5924 22 1 -0.3633 0.9329 0.4311 23 1 4.3866 1.4259 -0.0011 24 1 6.9803 0.8220 -0.3794 25 1 0.6966 -2.5664 0.0162 26 1 3.2707 -2.7797 1.5732 27 1 1.6209 -3.3134 2.0242 28 1 1.7725 -5.2978 0.6614 29 1 3.4423 -5.1700 1.3019 30 1 3.0788 -5.2925 -1.3656 31 1 4.2501 -4.1094 -0.7065 32 1 1.4917 -3.6473 -1.8339 33 1 2.9154 -2.5693 -1.8515 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214572037.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:27 Heat of formation + Delta-G solvation = 53.226226 kcal Electronic energy + Delta-G solvation = -15429.064331 eV Core-core repulsion = 13069.456284 eV Total energy + Delta-G solvation = -2359.608047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.50873 -36.98044 -33.54717 -31.52711 -29.89604 -27.96488 -27.35020 -25.69823 -23.82975 -20.39429 -20.05504 -19.33090 -17.94256 -16.88408 -15.27461 -14.80820 -14.46244 -14.11542 -13.93156 -13.08001 -12.66274 -12.64567 -11.84178 -11.67822 -11.23496 -11.12217 -11.02192 -10.94822 -10.65608 -10.47845 -10.38544 -10.35304 -10.01343 -9.74917 -9.47791 -9.15346 -8.64669 -7.60258 -6.98804 -6.37097 -3.88709 3.06887 3.23274 3.25969 3.46181 4.04948 4.18396 4.46893 5.30712 5.34269 5.42855 5.57660 5.66686 5.86457 5.95249 6.01910 6.12458 6.21876 6.24414 6.32859 6.39496 6.53110 6.60865 6.69698 6.92030 6.94763 7.10081 7.17358 7.46880 7.73922 7.75232 8.24050 8.64224 8.75739 9.15599 9.25805 9.59713 10.63536 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.014446 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.480339 B = 1937.742980 C = 2964.308261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.397 5.397 3 N -0.344 5.344 4 C 0.027 3.973 5 C -0.011 4.011 6 C -0.432 4.432 7 H 0.081 0.919 8 C 0.065 3.935 9 N -0.843 5.843 10 Si 0.904 3.096 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.266 1.266 14 C -0.082 4.082 15 C 0.012 3.988 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.109 4.109 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.199 0.801 24 H 0.271 0.729 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -6.828 0.241 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.186 5.186 3 N -0.166 5.166 4 C -0.159 4.159 5 C -0.021 4.021 6 C -0.466 4.466 7 H 0.099 0.901 8 C -0.145 4.145 9 N -0.475 5.475 10 Si 0.731 3.269 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.204 4.204 15 C -0.009 4.009 16 C -0.155 4.155 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.147 4.147 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.215 0.785 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.016 -5.695 0.217 8.286 hybrid contribution 1.195 -1.073 -0.170 1.615 sum -4.820 -6.767 0.048 8.309 Atomic orbital electron populations 1.21263 0.78271 1.02021 1.00680 1.47288 1.03920 1.03889 1.63467 1.76573 1.03786 1.08872 1.27374 1.24992 0.92926 0.97073 1.00933 1.17871 0.90509 0.91818 1.01865 1.18951 0.89142 0.94878 1.43638 0.90121 1.25641 0.99999 0.94903 0.93917 1.69510 1.24897 1.10368 1.42714 0.86359 0.81122 0.80712 0.78754 1.20140 1.20796 1.19029 1.20740 0.91132 0.87620 1.20892 1.19705 0.96906 0.89599 0.94677 1.22520 1.01883 0.94498 0.96637 1.22461 0.99629 0.97106 0.96812 1.22393 1.00918 0.97180 0.95501 1.22128 0.98241 0.96907 0.97423 0.93426 0.91840 0.91240 0.78460 0.91819 0.93152 0.89250 0.93359 0.92746 0.92323 0.93132 0.90564 0.93678 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.11 11.00 59.85 0.66 2.77 16 2 N -0.40 -9.27 3.98 -62.95 -0.25 -9.53 16 3 N -0.34 -9.00 12.47 30.97 0.39 -8.61 16 4 C 0.03 0.75 10.91 -16.80 -0.18 0.57 16 5 C -0.01 -0.29 5.41 -106.84 -0.58 -0.87 16 6 C -0.43 -11.24 7.67 -37.76 -0.29 -11.53 16 7 H 0.08 1.98 3.82 -52.49 -0.20 1.78 16 8 C 0.07 1.68 5.48 -17.35 -0.10 1.58 16 9 N -0.84 -22.33 10.39 55.54 0.58 -21.76 16 10 Si 0.90 19.54 29.56 -169.99 -5.03 14.51 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 C -0.08 -1.95 5.60 -81.03 -0.45 -2.41 16 15 C 0.01 0.23 3.08 -90.65 -0.28 -0.05 16 16 C -0.12 -2.15 5.82 -25.03 -0.15 -2.29 16 17 C -0.12 -1.92 6.91 -24.70 -0.17 -2.09 16 18 C -0.12 -2.06 6.26 -25.07 -0.16 -2.21 16 19 C -0.11 -2.00 5.84 -25.61 -0.15 -2.15 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.96 7.28 -51.93 -0.38 0.58 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.20 5.54 5.85 -52.49 -0.31 5.23 16 24 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 25 H 0.05 0.89 6.90 -51.93 -0.36 0.53 16 26 H 0.09 1.90 5.92 -51.92 -0.31 1.59 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.42 6.43 -51.93 -0.33 1.09 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.64 7.24 -51.93 -0.38 1.26 16 LS Contribution 260.44 15.07 3.92 3.92 Total: -1.00 -28.77 260.44 -6.59 -35.36 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.35 Total: 4.79 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.84 Total: -18.69 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.71 Total: -39.89 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.77 -6.59 -35.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214572037.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.584 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds