Wall clock time and date at job start Mon Mar 30 2020 03:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39883 * 125.67979 * 2 1 4 4 C 1.30315 * 109.23235 * 180.02562 * 3 2 1 5 5 C 1.41881 * 108.04956 * 0.02562 * 4 3 2 6 6 C 1.41592 * 126.56176 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00782 * 170.78140 * 6 5 4 8 8 C 1.39698 * 119.99881 * 350.78222 * 6 5 4 9 9 N 1.31036 * 119.99915 * 6.64211 * 8 6 5 10 10 Si 1.86801 * 120.00358 * 186.64412 * 8 6 5 11 11 H 1.48503 * 109.47131 * 94.98093 * 10 8 6 12 12 H 1.48497 * 109.47208 * 214.98109 * 10 8 6 13 13 H 1.48503 * 109.46863 * 334.98415 * 10 8 6 14 14 C 1.34506 * 125.67468 * 180.02562 * 2 1 3 15 15 C 1.50697 * 126.40384 * 359.96357 * 14 2 1 16 16 C 1.54269 * 110.02944 * 237.71680 * 15 14 2 17 17 C 1.54964 * 104.16280 * 217.13964 * 16 15 14 18 18 C 1.54894 * 102.77661 * 37.88565 * 17 16 15 19 19 C 1.53879 * 110.03235 * 120.50329 * 15 14 2 20 20 H 1.08992 * 109.47262 * 95.19385 * 1 2 3 21 21 H 1.09002 * 109.47316 * 215.20311 * 1 2 3 22 22 H 1.09003 * 109.46646 * 335.19691 * 1 2 3 23 23 H 1.08002 * 125.97466 * 179.97438 * 4 3 2 24 24 H 0.96998 * 119.99998 * 179.97438 * 9 8 6 25 25 H 1.08991 * 110.01942 * 359.10238 * 15 14 2 26 26 H 1.09009 * 110.48827 * 335.78480 * 16 15 14 27 27 H 1.09001 * 110.48901 * 98.42441 * 16 15 14 28 28 H 1.09002 * 110.71670 * 279.57460 * 17 16 15 29 29 H 1.08993 * 110.92896 * 156.29832 * 17 16 15 30 30 H 1.09003 * 110.48214 * 203.41378 * 18 17 16 31 31 H 1.08999 * 110.60035 * 80.82055 * 18 17 16 32 32 H 1.08996 * 110.02709 * 238.56520 * 19 15 14 33 33 H 1.08993 * 110.02914 * 359.94428 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2809 1.1363 0.0000 4 6 3.5307 0.7673 -0.0006 5 6 3.5704 -0.6510 -0.0015 6 6 4.7308 -1.4623 -0.0019 7 1 4.6444 -2.5285 0.1472 8 6 5.9875 -0.8836 -0.1950 9 7 6.1077 0.4202 -0.2457 10 14 7.4968 -1.9685 -0.3811 11 1 7.7705 -2.1927 -1.8234 12 1 8.6659 -1.3022 0.2469 13 1 7.2537 -3.2733 0.2852 14 6 2.2494 -1.0926 -0.0005 15 6 1.7857 -2.5265 -0.0004 16 6 2.3603 -3.2675 1.2246 17 6 2.6761 -4.6889 0.6942 18 6 3.2033 -4.4116 -0.7356 19 6 2.3210 -3.2537 -1.2463 20 1 -0.3633 -0.0930 -1.0234 21 1 -0.3634 -0.8397 0.5924 22 1 -0.3633 0.9329 0.4311 23 1 4.3866 1.4259 -0.0011 24 1 6.9803 0.8220 -0.3794 25 1 0.6966 -2.5664 0.0162 26 1 3.2707 -2.7797 1.5732 27 1 1.6209 -3.3134 2.0242 28 1 1.7725 -5.2978 0.6614 29 1 3.4423 -5.1700 1.3019 30 1 3.0788 -5.2925 -1.3656 31 1 4.2501 -4.1094 -0.7065 32 1 1.4917 -3.6473 -1.8339 33 1 2.9154 -2.5693 -1.8515 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214572037.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:27 Heat of formation + Delta-G solvation = 36.471427 kcal Electronic energy + Delta-G solvation = -15429.790873 eV Core-core repulsion = 13069.456284 eV Total energy + Delta-G solvation = -2360.334589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.35877 -38.47107 -35.42807 -33.30579 -31.59122 -29.36012 -29.08292 -27.35040 -25.68834 -22.08125 -21.48645 -21.10857 -19.67068 -18.72920 -16.89172 -16.56378 -16.03735 -15.76122 -15.46869 -14.71683 -14.49927 -14.04998 -13.34656 -13.30497 -13.04626 -12.82259 -12.74460 -12.67837 -12.15497 -11.92365 -11.80093 -11.74733 -11.72153 -11.19643 -11.10581 -11.03398 -10.56909 -9.47987 -8.92981 -8.26524 -5.85163 1.31189 1.45106 1.56532 1.60345 2.33880 2.38178 2.47211 3.63759 3.92140 4.00186 4.03131 4.18184 4.51936 4.60322 4.63666 4.74694 4.77697 4.88770 4.92753 4.99198 5.00495 5.16686 5.23940 5.31565 5.50893 5.54243 5.62877 5.72403 5.82856 5.91197 6.23228 6.75537 6.84845 7.24783 7.29862 7.62911 8.75797 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.014446 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.480339 B = 1937.742980 C = 2964.308261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.393 5.393 3 N -0.368 5.368 4 C -0.008 4.008 5 C -0.056 4.056 6 C -0.447 4.447 7 H 0.090 0.910 8 C 0.014 3.986 9 N -0.878 5.878 10 Si 0.969 3.031 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.255 1.255 14 C -0.060 4.060 15 C 0.007 3.993 16 C -0.117 4.117 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.106 4.106 20 H 0.069 0.931 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.180 0.820 24 H 0.272 0.728 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 -9.669 0.279 12.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.181 5.181 3 N -0.192 5.192 4 C -0.192 4.192 5 C -0.065 4.065 6 C -0.481 4.481 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.511 5.511 10 Si 0.793 3.207 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.179 1.179 14 C -0.184 4.184 15 C -0.013 4.013 16 C -0.156 4.156 17 C -0.149 4.149 18 C -0.160 4.160 19 C -0.144 4.144 20 H 0.088 0.912 21 H 0.113 0.887 22 H 0.100 0.900 23 H 0.197 0.803 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.890 -8.521 0.258 11.616 hybrid contribution 1.540 -0.186 -0.182 1.562 sum -6.350 -8.707 0.076 10.777 Atomic orbital electron populations 1.21755 0.74593 1.04212 1.02885 1.47864 1.06151 1.03145 1.60893 1.76471 1.03666 1.10255 1.28833 1.24807 0.93152 0.97751 1.03459 1.18271 0.92386 0.91722 1.04157 1.19210 0.89600 0.95295 1.44009 0.89232 1.26470 1.02800 0.96081 0.93826 1.69645 1.25410 1.11884 1.44210 0.85352 0.77462 0.79249 0.78619 1.19937 1.20627 1.17898 1.21489 0.90496 0.89749 1.16707 1.19974 0.98663 0.86752 0.95954 1.22459 1.00644 0.95819 0.96639 1.22437 1.01238 0.95650 0.95559 1.22376 0.99029 0.97551 0.97006 1.22074 0.98984 0.96679 0.96676 0.91216 0.88667 0.89984 0.80346 0.91799 0.90213 0.93038 0.91371 0.89549 0.91513 0.90151 0.93238 0.90632 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.37 11.00 127.77 1.41 4.78 16 2 N -0.39 -17.97 3.98 -353.09 -1.41 -19.37 16 3 N -0.37 -19.70 12.47 -55.94 -0.70 -20.40 16 4 C -0.01 -0.45 10.91 85.82 0.94 0.48 16 5 C -0.06 -3.05 5.41 -21.30 -0.12 -3.17 16 6 C -0.45 -24.00 7.67 23.45 0.18 -23.82 16 7 H 0.09 4.49 3.82 -2.91 -0.01 4.48 16 8 C 0.01 0.74 5.48 85.16 0.47 1.21 16 9 N -0.88 -49.06 10.39 21.79 0.23 -48.83 16 10 Si 0.97 41.07 29.56 68.60 2.03 43.10 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 13 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 14 C -0.06 -2.78 5.60 42.40 0.24 -2.55 16 15 C 0.01 0.25 3.08 -10.81 -0.03 0.22 16 16 C -0.12 -3.97 5.82 31.70 0.18 -3.79 16 17 C -0.11 -3.04 6.91 31.91 0.22 -2.82 16 18 C -0.12 -3.74 6.26 31.67 0.20 -3.54 16 19 C -0.11 -3.62 5.84 31.32 0.18 -3.44 16 20 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.09 2.44 7.28 -2.39 -0.02 2.42 16 22 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.18 10.81 5.85 -2.91 -0.02 10.79 16 24 H 0.27 14.13 8.30 -92.71 -0.77 13.36 16 25 H 0.08 2.42 6.90 -2.39 -0.02 2.40 16 26 H 0.05 2.15 5.92 -2.38 -0.01 2.14 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.78 6.43 -2.39 -0.02 1.76 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 1.57 7.24 -2.39 -0.02 1.56 16 Total: -1.00 -65.40 260.44 5.12 -60.28 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 1.11 Total: 21.67 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 3.86 Total: -36.44 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -1.88 Total: -88.60 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -65.40 5.12 -60.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214572037.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.747 kcal (2) G-P(sol) polarization free energy of solvation -65.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds