Wall clock time and date at job start Mon Mar 30 2020 03:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34506 * 125.67268 * 2 1 4 4 C 1.39274 * 107.18567 * 180.02562 * 3 2 1 5 5 C 1.41597 * 126.55236 * 179.97438 * 4 3 2 6 6 H 1.08009 * 119.99475 * 159.96299 * 5 4 3 7 7 C 1.39693 * 120.00736 * 339.96276 * 5 4 3 8 8 N 1.31021 * 120.00361 * 164.51997 * 7 5 4 9 9 Si 1.86808 * 119.99534 * 344.52004 * 7 5 4 10 10 H 1.48491 * 109.47244 * 89.99728 * 9 7 5 11 11 H 1.48505 * 109.46834 * 329.99623 * 9 7 5 12 12 H 1.48501 * 109.46829 * 210.00122 * 9 7 5 13 13 C 1.41880 * 106.88620 * 0.22531 * 4 3 2 14 14 C 1.50701 * 125.97698 * 179.74954 * 13 4 3 15 15 C 1.54265 * 110.03609 * 237.17071 * 14 13 4 16 16 C 1.54888 * 104.19568 * 217.10678 * 15 14 13 17 17 C 1.54893 * 102.75168 * 37.93804 * 16 15 14 18 18 C 1.53871 * 110.03367 * 119.99698 * 14 13 4 19 19 N 1.30319 * 108.04564 * 359.61573 * 13 4 3 20 20 H 1.08995 * 109.47137 * 90.00561 * 1 2 3 21 21 H 1.09004 * 109.46491 * 210.00663 * 1 2 3 22 22 H 1.08994 * 109.47335 * 330.00249 * 1 2 3 23 23 H 1.08005 * 126.40532 * 0.05447 * 3 2 1 24 24 H 0.96998 * 120.00229 * 358.21832 * 8 7 5 25 25 H 1.09007 * 110.01369 * 358.60765 * 14 13 4 26 26 H 1.09008 * 110.47937 * 335.78117 * 15 14 13 27 27 H 1.08989 * 110.48979 * 98.42156 * 15 14 13 28 28 H 1.08998 * 110.75351 * 279.62140 * 16 15 14 29 29 H 1.09000 * 110.75748 * 156.25478 * 16 15 14 30 30 H 1.08991 * 110.48670 * 203.38541 * 17 16 15 31 31 H 1.08998 * 110.60069 * 80.79082 * 17 16 15 32 32 H 1.08999 * 110.03645 * 238.57019 * 18 14 13 33 33 H 1.09002 * 110.02791 * 359.95549 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2494 1.0927 0.0000 4 6 3.5703 0.6510 -0.0006 5 6 4.7308 1.4624 -0.0013 6 1 5.6770 1.0516 0.3188 7 6 4.6519 2.7941 -0.4160 8 7 5.6261 3.6253 -0.1391 9 14 3.1573 3.3896 -1.3653 10 1 2.1312 3.8849 -0.4130 11 1 2.5954 2.2672 -2.1589 12 1 3.5573 4.4901 -2.2786 13 6 3.5307 -0.7672 -0.0063 14 6 4.7250 -1.6862 -0.0142 15 6 4.6605 -2.6262 -1.2357 16 6 5.2106 -3.9742 -0.7071 17 6 4.6310 -4.0409 0.7277 18 6 4.7064 -2.5856 1.2341 19 7 2.2808 -1.1361 -0.0006 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3632 -0.8900 0.5140 22 1 -0.3634 0.8899 0.5138 23 1 1.9171 2.1203 0.0008 24 1 6.3902 3.3226 0.3761 25 1 5.6450 -1.1021 -0.0399 26 1 3.6308 -2.7409 -1.5747 27 1 5.2886 -2.2477 -2.0420 28 1 6.3002 -3.9640 -0.6835 29 1 4.8439 -4.8044 -1.3108 30 1 5.2377 -4.6946 1.3542 31 1 3.5969 -4.3849 0.7081 32 1 5.6177 -2.4387 1.8138 33 1 3.8339 -2.3568 1.8461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214572111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:22 Heat of formation + Delta-G solvation = 30.675372 kcal Electronic energy + Delta-G solvation = -15060.937635 eV Core-core repulsion = 12700.351709 eV Total energy + Delta-G solvation = -2360.585925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.59915 -38.71075 -35.56285 -33.84361 -31.39274 -29.99056 -29.53845 -27.50768 -25.21030 -22.58827 -21.68338 -21.40454 -19.59419 -19.51518 -17.58519 -16.59153 -16.07777 -15.92216 -15.47447 -15.19059 -14.52736 -14.20997 -14.17974 -13.64083 -13.48264 -13.11812 -12.78333 -12.23636 -12.08107 -11.93715 -11.89054 -11.76386 -11.56330 -11.42009 -11.31950 -11.11539 -10.89214 -9.70553 -9.34452 -9.03757 -6.18023 1.19120 1.32594 1.45092 1.73363 2.07174 2.09179 2.31354 3.27463 3.73571 3.80981 3.88317 4.09763 4.22686 4.47874 4.52175 4.57672 4.66024 4.69266 4.70812 4.72240 4.88491 4.99321 5.11826 5.18381 5.21945 5.30761 5.38825 5.50389 5.58824 5.69129 5.83091 6.28426 6.60427 6.68781 7.02726 7.27093 8.29837 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.010814 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.047363 B = 2588.546979 C = 3273.492343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.385 5.385 3 C -0.122 4.122 4 C -0.066 4.066 5 C -0.524 4.524 6 H 0.040 0.960 7 C -0.004 4.004 8 N -0.885 5.885 9 Si 1.106 2.894 10 H -0.256 1.256 11 H -0.268 1.268 12 H -0.287 1.287 13 C 0.019 3.981 14 C -0.004 4.004 15 C -0.110 4.110 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.109 4.109 19 N -0.307 5.307 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.097 0.903 23 H 0.159 0.841 24 H 0.267 0.733 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 -10.557 -0.741 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.174 5.174 3 C -0.263 4.263 4 C -0.076 4.076 5 C -0.558 4.558 6 H 0.058 0.942 7 C -0.211 4.211 8 N -0.514 5.514 9 Si 0.929 3.071 10 H -0.182 1.182 11 H -0.193 1.193 12 H -0.214 1.214 13 C -0.148 4.148 14 C -0.024 4.024 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.148 4.148 19 N -0.132 5.132 20 H 0.094 0.906 21 H 0.111 0.889 22 H 0.115 0.885 23 H 0.176 0.824 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.225 -10.138 -1.441 13.134 hybrid contribution 1.637 0.033 1.011 1.924 sum -6.589 -10.105 -0.430 12.071 Atomic orbital electron populations 1.21938 0.73136 1.04971 1.03618 1.47788 1.06659 1.02550 1.60370 1.22568 0.91157 0.92616 1.19919 1.18470 0.92751 0.92440 1.03957 1.19659 0.94404 0.97398 1.44382 0.94207 1.27947 1.04399 0.92927 0.95789 1.70708 1.09428 1.37392 1.33832 0.83209 0.72007 0.75458 0.76431 1.18250 1.19315 1.21419 1.22529 0.93161 0.93757 1.05304 1.20071 0.91957 0.93556 0.96844 1.22374 1.00850 0.95477 0.96143 1.22471 1.00686 0.95916 0.95944 1.22293 1.01238 0.94738 0.96642 1.22141 1.00917 0.95604 0.96113 1.76255 1.02027 1.09358 1.25537 0.90553 0.88905 0.88452 0.82390 0.92290 0.92114 0.92517 0.92157 0.90465 0.89830 0.89702 0.91915 0.91613 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.94 11.44 127.77 1.46 4.40 16 2 N -0.39 -16.41 3.98 -366.47 -1.46 -17.87 16 3 C -0.12 -5.85 8.86 84.53 0.75 -5.10 16 4 C -0.07 -3.54 5.48 -21.30 -0.12 -3.66 16 5 C -0.52 -30.79 9.40 23.45 0.22 -30.57 16 6 H 0.04 2.48 7.41 -2.91 -0.02 2.46 16 7 C 0.00 -0.20 5.50 85.17 0.47 0.26 16 8 N -0.88 -52.66 13.67 21.79 0.30 -52.37 16 9 Si 1.11 50.93 24.93 68.60 1.71 52.64 16 10 H -0.26 -10.53 6.62 99.48 0.66 -9.87 16 11 H -0.27 -12.19 6.65 99.48 0.66 -11.53 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 13 C 0.02 0.91 5.51 43.69 0.24 1.15 16 14 C 0.00 -0.15 3.34 -10.82 -0.04 -0.19 16 15 C -0.11 -3.77 6.35 31.67 0.20 -3.57 16 16 C -0.11 -2.89 6.91 31.89 0.22 -2.67 16 17 C -0.11 -2.96 6.83 31.67 0.22 -2.74 16 18 C -0.11 -3.77 6.45 31.32 0.20 -3.57 16 19 N -0.31 -13.98 12.21 -46.36 -0.57 -14.54 16 20 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 22 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 23 H 0.16 7.13 4.31 -2.91 -0.01 7.12 16 24 H 0.27 15.92 8.72 -92.71 -0.81 15.11 16 25 H 0.06 2.73 7.15 -2.38 -0.02 2.71 16 26 H 0.06 2.07 7.66 -2.38 -0.02 2.05 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 1.69 7.66 -2.39 -0.02 1.67 16 Total: -1.00 -68.11 267.42 4.76 -63.34 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.96 Total: 15.06 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.83 Total: -46.26 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.73 Total: -84.78 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 1.71 Total: 52.64 kcal Total: -68.11 4.76 -63.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214572111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.020 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds