Wall clock time and date at job start Mon Mar 30 2020 03:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 119.99630 * 2 1 4 4 H 1.48501 * 109.46748 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47384 * 299.99875 * 3 2 1 6 6 H 1.48500 * 109.47307 * 60.00433 * 3 2 1 7 7 C 1.40012 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99798 * 194.85705 * 7 2 1 9 9 C 1.40589 * 119.99973 * 14.86537 * 7 2 1 10 10 C 1.40840 * 120.71745 * 25.47437 * 9 7 2 11 11 C 1.37626 * 120.03623 * 180.02562 * 10 9 7 12 12 C 1.38410 * 121.58135 * 0.03857 * 11 10 9 13 13 C 1.38960 * 121.05173 * 359.96359 * 12 11 10 14 14 N 1.37885 * 133.41193 * 180.02562 * 13 12 11 15 15 H 0.97000 * 125.57313 * 359.96576 * 14 13 12 16 16 C 1.36656 * 108.85482 * 179.97438 * 14 13 12 17 17 C 1.35014 * 109.49498 * 359.97438 * 16 14 13 18 18 Cl 1.73598 * 126.10867 * 179.97438 * 17 16 14 19 19 C 1.40573 * 119.63591 * 0.02562 * 13 12 11 20 20 H 0.96994 * 120.00438 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.98193 * 0.02562 * 10 9 7 22 22 H 1.08010 * 119.20531 * 180.02562 * 11 10 9 23 23 H 1.08007 * 119.47220 * 179.97438 * 12 11 10 24 24 H 1.08003 * 125.25435 * 180.26423 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0083 -1.2125 -0.0005 8 1 3.0612 -1.2282 0.2393 9 6 1.3407 -2.4096 -0.3134 10 6 0.1840 -2.3993 -1.1168 11 6 -0.4589 -3.5794 -1.4140 12 6 0.0023 -4.7953 -0.9401 13 6 1.1382 -4.8698 -0.1430 14 7 1.8096 -5.9154 0.4545 15 1 1.5598 -6.8511 0.3999 16 6 2.8844 -5.4179 1.1364 17 6 2.9260 -4.0759 0.9948 18 17 4.1120 -3.0109 1.6824 19 6 1.8321 -3.6934 0.1898 20 1 -0.4850 0.8400 0.0004 21 1 -0.1988 -1.4650 -1.4999 22 1 -1.3446 -3.5560 -2.0316 23 1 -0.5290 -5.7007 -1.1940 24 1 3.5939 -6.0078 1.6977 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214614813.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:36 Heat of formation + Delta-G solvation = 23.543962 kcal Electronic energy + Delta-G solvation = -12376.934206 eV Core-core repulsion = 10087.363354 eV Total energy + Delta-G solvation = -2289.570853 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.68657 -37.50407 -37.05627 -35.18657 -32.32905 -30.10533 -29.45661 -26.78047 -23.06816 -22.29238 -21.23579 -19.55805 -17.89547 -16.83632 -16.64859 -15.72436 -15.22327 -15.13590 -14.58314 -14.27460 -13.57114 -13.31305 -12.86712 -12.77730 -12.65052 -12.24870 -11.99242 -11.88942 -11.56663 -11.03164 -10.87621 -9.90870 -8.82602 -8.66214 -8.36783 -6.18295 0.63607 1.27373 1.38676 1.51687 1.53911 1.59849 1.96534 2.20714 2.68735 2.77107 3.78385 4.31840 4.40621 4.70875 4.88819 5.01659 5.16689 5.23475 5.42124 5.44524 5.91395 6.06624 6.20841 6.24642 6.38008 6.76281 6.93924 7.04210 7.08938 8.29371 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.013263 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.728347 B = 2110.621852 C = 3074.010332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.033 3.967 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.088 0.912 9 C 0.124 3.876 10 C -0.255 4.255 11 C -0.060 4.060 12 C -0.282 4.282 13 C 0.116 3.884 14 N -0.572 5.572 15 H 0.430 0.570 16 C 0.018 3.982 17 C -0.113 4.113 18 Cl -0.067 7.067 19 C -0.217 4.217 20 H 0.290 0.710 21 H 0.103 0.897 22 H 0.112 0.888 23 H 0.114 0.886 24 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -5.529 1.400 6.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.184 4.184 3 Si 0.797 3.203 4 H -0.181 1.181 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.106 0.894 9 C 0.120 3.880 10 C -0.276 4.276 11 C -0.080 4.080 12 C -0.304 4.304 13 C 0.008 3.992 14 N -0.177 5.177 15 H 0.271 0.729 16 C -0.110 4.110 17 C -0.147 4.147 18 Cl -0.039 7.039 19 C -0.221 4.221 20 H 0.101 0.899 21 H 0.121 0.879 22 H 0.130 0.870 23 H 0.132 0.868 24 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.721 -5.429 1.492 6.749 hybrid contribution 0.034 0.551 0.045 0.554 sum 3.755 -4.878 1.538 6.345 Atomic orbital electron populations 1.69908 1.09018 1.30661 1.33584 1.26850 0.95503 1.04550 0.91452 0.85230 0.79598 0.76277 0.79191 1.18142 1.18480 1.18851 1.19972 0.98006 0.91525 1.39014 0.89392 1.18461 0.91316 0.90467 0.87725 1.20950 1.02046 0.97095 1.07529 1.20568 0.97795 0.92109 0.97519 1.19317 1.01003 0.97605 1.12517 1.18127 0.95896 0.86543 0.98607 1.41441 1.23641 1.08366 1.44296 0.72943 1.21699 0.94386 0.91937 1.02930 1.19900 0.96132 0.91216 1.07449 1.98229 1.55880 1.66115 1.83664 1.19396 1.00453 0.94228 1.08062 0.89908 0.87910 0.86970 0.86751 0.77696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.38 10.87 21.84 0.24 -42.14 14 2 C 0.03 1.69 5.20 85.27 0.44 2.14 14 3 Si 0.98 38.68 29.59 68.60 2.03 40.71 14 4 H -0.26 -10.12 7.11 99.48 0.71 -9.42 14 5 H -0.26 -9.78 7.11 99.48 0.71 -9.08 14 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 14 7 C -0.46 -25.00 8.71 23.27 0.20 -24.79 14 8 H 0.09 4.69 6.14 -2.91 -0.02 4.68 14 9 C 0.12 6.91 5.73 -19.94 -0.11 6.80 14 10 C -0.26 -13.85 8.69 22.76 0.20 -13.66 14 11 C -0.06 -2.88 9.94 22.17 0.22 -2.66 14 12 C -0.28 -12.43 10.02 22.48 0.23 -12.20 14 13 C 0.12 5.20 7.26 38.93 0.28 5.48 14 14 N -0.57 -19.36 6.14 -187.24 -1.15 -20.51 14 15 H 0.43 10.50 8.96 -92.71 -0.83 9.67 14 16 C 0.02 0.62 11.84 83.20 0.98 1.61 14 17 C -0.11 -4.90 6.68 22.23 0.15 -4.75 14 18 Cl -0.07 -2.72 27.24 -2.72 -0.07 -2.79 14 19 C -0.22 -11.00 6.21 -19.88 -0.12 -11.12 14 20 H 0.29 13.62 8.30 -92.71 -0.77 12.86 14 21 H 0.10 5.79 6.15 -2.91 -0.02 5.77 14 22 H 0.11 4.64 8.06 -2.91 -0.02 4.62 14 23 H 0.11 4.24 8.06 -2.91 -0.02 4.22 14 24 H 0.21 4.87 8.06 -2.91 -0.02 4.85 14 Total: -1.00 -62.94 229.16 3.93 -59.01 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.41 Total: 18.89 kcal Atomic # 6 Polarization: -55.63 SS G_CDS: 2.47 Total: -53.16 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.91 Total: -62.65 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.07 Total: -2.79 kcal Total: -62.94 3.93 -59.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214614813.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.557 kcal (2) G-P(sol) polarization free energy of solvation -62.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds