Wall clock time and date at job start Mon Mar 30 2020 03:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86808 * 119.99889 * 2 1 4 4 H 1.48497 * 109.47038 * 274.64918 * 3 2 1 5 5 H 1.48507 * 109.46773 * 34.64956 * 3 2 1 6 6 H 1.48495 * 109.46860 * 154.64785 * 3 2 1 7 7 C 1.39863 * 120.00515 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00300 * 162.08861 * 7 2 1 9 9 C 1.41311 * 119.99542 * 342.08816 * 7 2 1 10 10 C 1.41152 * 120.08430 * 334.98852 * 9 7 2 11 11 C 1.35997 * 120.57449 * 179.97438 * 10 9 7 12 12 C 1.39716 * 120.38721 * 359.79971 * 11 10 9 13 13 N 1.37346 * 133.09260 * 179.66100 * 12 11 10 14 14 H 0.96995 * 124.99241 * 0.61269 * 13 12 11 15 15 C 1.37030 * 110.00908 * 180.34161 * 13 12 11 16 16 C 1.34225 * 109.96493 * 0.22936 * 15 13 12 17 17 Cl 1.73599 * 126.55441 * 179.97438 * 16 15 13 18 18 C 1.41050 * 119.80072 * 0.43606 * 12 11 10 19 19 C 1.39023 * 120.09815 * 359.54556 * 18 12 11 20 20 H 0.96994 * 119.99555 * 359.97438 * 1 2 3 21 21 H 1.07991 * 119.71188 * 359.97438 * 10 9 7 22 22 H 1.08002 * 119.80181 * 180.02562 * 11 10 9 23 23 H 1.07994 * 125.01177 * 180.19139 * 15 13 12 24 24 H 1.07997 * 120.34590 * 180.21932 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3922 2.1032 -1.3954 5 1 1.4929 2.6224 0.7961 6 1 3.5861 1.4139 0.5995 7 6 2.0084 -1.2112 -0.0005 8 1 3.0491 -1.2337 -0.2882 9 6 1.3532 -2.4055 0.3753 10 6 0.2274 -2.3575 1.2254 11 6 -0.4111 -3.5007 1.5930 12 6 0.0369 -4.7405 1.1301 13 7 -0.3931 -6.0290 1.3331 14 1 -1.1539 -6.2821 1.8789 15 6 0.4072 -6.9040 0.6463 16 6 1.3665 -6.2308 -0.0080 17 17 2.6103 -6.9138 -1.0082 18 6 1.1634 -4.8075 0.2840 19 6 1.8204 -3.6427 -0.0959 20 1 -0.4849 0.8400 0.0004 21 1 -0.1301 -1.4048 1.5869 22 1 -1.2716 -3.4495 2.2436 23 1 0.2845 -7.9769 0.6340 24 1 2.6812 -3.6891 -0.7464 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214614892.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:41 Heat of formation + Delta-G solvation = 37.573147 kcal Electronic energy + Delta-G solvation = -12112.373404 eV Core-core repulsion = 9823.410902 eV Total energy + Delta-G solvation = -2288.962502 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01730 -36.12072 -35.64435 -33.06086 -30.65266 -28.94763 -27.52122 -24.94752 -21.32940 -20.56265 -19.84041 -17.37644 -16.70143 -15.19354 -14.99608 -13.80774 -13.66465 -13.55035 -12.73094 -12.47064 -12.28350 -11.70705 -11.27463 -11.11252 -11.01543 -10.78193 -10.39686 -10.13380 -9.81586 -9.39373 -9.05115 -8.41214 -7.11541 -6.86133 -6.61248 -4.24920 2.30615 2.82537 2.95424 3.09549 3.14394 3.24062 3.55995 3.96319 4.14348 4.60976 5.43171 5.66965 5.91818 6.19169 6.37308 6.72681 6.87391 7.03387 7.20588 7.32080 7.51388 7.77297 7.88981 8.02449 8.22484 8.39095 8.58039 8.90804 8.95548 10.21680 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.042319 B = 0.008119 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.482127 B = 3447.716230 C = 4029.893159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.099 3.901 10 C -0.103 4.103 11 C -0.127 4.127 12 C 0.004 3.996 13 N -0.591 5.591 14 H 0.406 0.594 15 C 0.043 3.957 16 C -0.140 4.140 17 Cl -0.074 7.074 18 C -0.053 4.053 19 C -0.209 4.209 20 H 0.280 0.720 21 H 0.127 0.873 22 H 0.093 0.907 23 H 0.159 0.841 24 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 -6.600 2.129 6.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.097 3.903 10 C -0.123 4.123 11 C -0.147 4.147 12 C -0.099 4.099 13 N -0.195 5.195 14 H 0.241 0.759 15 C -0.086 4.086 16 C -0.176 4.176 17 Cl -0.046 7.046 18 C -0.057 4.057 19 C -0.230 4.230 20 H 0.090 0.910 21 H 0.144 0.856 22 H 0.111 0.889 23 H 0.176 0.824 24 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.013 -6.489 2.104 6.896 hybrid contribution 0.016 0.489 0.054 0.492 sum -0.997 -6.000 2.158 6.453 Atomic orbital electron populations 1.69833 1.07503 1.29126 1.36471 1.25877 0.94714 1.01250 0.92261 0.86322 0.80769 0.80748 0.79030 1.19627 1.20134 1.18446 1.19478 0.98228 0.90996 1.40358 0.90328 1.17444 0.91251 0.92014 0.89625 1.21045 0.97190 0.96332 0.97745 1.19470 1.01377 0.89893 1.03989 1.17921 0.99936 0.84642 1.07413 1.41266 1.28500 1.04887 1.44811 0.75870 1.21024 0.94022 0.94612 0.98953 1.20761 0.97487 0.92661 1.06698 1.98241 1.53137 1.84431 1.68809 1.18595 0.96549 0.90650 0.99919 1.20294 1.04631 0.90371 1.07737 0.90966 0.85561 0.88935 0.82369 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.47 10.98 55.54 0.61 -19.86 14 2 C 0.08 1.88 5.12 -17.34 -0.09 1.79 14 3 Si 0.91 18.60 29.60 -169.99 -5.03 13.57 14 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 14 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 14 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 14 7 C -0.46 -12.22 9.03 -37.81 -0.34 -12.56 14 8 H 0.08 2.03 7.91 -52.49 -0.41 1.61 14 9 C 0.10 2.65 5.57 -106.81 -0.59 2.06 14 10 C -0.10 -2.61 8.60 -39.28 -0.34 -2.95 14 11 C -0.13 -2.86 9.99 -39.83 -0.40 -3.26 14 12 C 0.00 0.09 7.28 -83.78 -0.61 -0.52 14 13 N -0.59 -10.29 6.05 -10.45 -0.06 -10.35 14 14 H 0.41 5.44 8.96 -40.82 -0.37 5.08 14 15 C 0.04 0.74 11.80 -16.64 -0.20 0.54 14 16 C -0.14 -2.83 6.92 -37.58 -0.26 -3.09 14 17 Cl -0.07 -1.34 29.32 -51.86 -1.52 -2.86 14 18 C -0.05 -1.27 6.36 -105.12 -0.67 -1.93 14 19 C -0.21 -5.36 9.86 -38.48 -0.38 -5.74 14 20 H 0.28 6.48 8.30 -40.82 -0.34 6.14 14 21 H 0.13 3.23 6.16 -52.49 -0.32 2.91 14 22 H 0.09 1.81 8.06 -52.49 -0.42 1.39 14 23 H 0.16 2.02 8.06 -52.49 -0.42 1.59 14 24 H 0.10 2.45 8.06 -52.49 -0.42 2.02 14 LS Contribution 233.30 15.07 3.52 3.52 Total: -1.00 -28.19 233.30 -7.87 -36.06 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -1.51 Total: 5.59 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -3.87 Total: -25.67 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.55 Total: -30.21 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.52 Total: -2.86 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.19 -7.87 -36.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214614892.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.638 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds