Wall clock time and date at job start Mon Mar 30 2020 03:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86801 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47469 * 300.00622 * 3 2 1 6 6 H 1.48501 * 109.46984 * 60.00437 * 3 2 1 7 7 C 1.39945 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99514 * 197.89168 * 7 2 1 9 9 C 1.40962 * 120.00176 * 17.88473 * 7 2 1 10 10 C 1.40636 * 120.29900 * 24.69941 * 9 7 2 11 11 C 1.37917 * 120.36854 * 179.97438 * 10 9 7 12 12 C 1.38282 * 120.68089 * 0.02978 * 11 10 9 13 13 C 1.39854 * 120.20598 * 359.97438 * 12 11 10 14 14 C 1.46591 * 133.87177 * 180.02562 * 13 12 11 15 15 Cl 1.73603 * 126.58516 * 0.23809 * 14 13 12 16 16 C 1.34384 * 106.83034 * 179.97438 * 14 13 12 17 17 N 1.36858 * 109.77695 * 0.02562 * 16 14 13 18 18 H 0.96998 * 124.99586 * 179.97438 * 17 16 14 19 19 C 1.36939 * 110.00505 * 0.02562 * 17 16 14 20 20 H 0.97002 * 120.00145 * 359.97438 * 1 2 3 21 21 H 1.08002 * 119.81464 * 359.97438 * 10 9 7 22 22 H 1.07994 * 119.65925 * 179.97438 * 11 10 9 23 23 H 1.08003 * 119.89816 * 180.02562 * 12 11 10 24 24 H 1.07995 * 125.11001 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3465 -0.0006 5 1 1.8837 2.3966 -1.2124 6 1 1.8838 2.3964 1.2126 7 6 2.0083 -1.2119 -0.0005 8 1 3.0492 -1.2345 0.2868 9 6 1.3547 -2.4031 -0.3760 10 6 0.2283 -2.3596 -1.2169 11 6 -0.4120 -3.5242 -1.5856 12 6 0.0405 -4.7510 -1.1357 13 6 1.1582 -4.8247 -0.2983 14 6 1.8789 -5.9307 0.3391 15 17 1.5046 -7.6210 0.2092 16 6 2.8886 -5.3855 1.0385 17 7 2.8673 -4.0243 0.8977 18 1 3.4973 -3.4125 1.3096 19 6 1.8252 -3.6530 0.0907 20 1 -0.4850 0.8400 0.0004 21 1 -0.1373 -1.4089 -1.5760 22 1 -1.2762 -3.4774 -2.2315 23 1 -0.4703 -5.6551 -1.4326 24 1 3.6080 -5.9382 1.6243 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214615050.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:31 Heat of formation + Delta-G solvation = 20.389412 kcal Electronic energy + Delta-G solvation = -12239.768596 eV Core-core repulsion = 9950.060952 eV Total energy + Delta-G solvation = -2289.707644 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.69180 -37.63541 -37.07581 -35.37355 -32.32605 -30.25007 -29.17492 -27.05300 -23.11925 -22.22060 -21.43653 -19.27695 -18.26394 -16.88540 -16.60625 -15.75074 -15.25101 -15.02729 -14.54560 -14.48168 -13.63347 -13.40411 -13.02394 -12.81908 -12.66434 -12.20872 -12.06745 -11.94426 -11.51352 -11.24428 -11.06581 -9.93468 -8.90572 -8.62655 -8.43218 -6.23137 0.65338 1.22105 1.38252 1.42086 1.47659 1.53916 1.90818 2.19664 2.71848 2.78385 3.71946 4.04865 4.39217 4.65958 4.78679 4.88859 5.11518 5.20179 5.37151 5.52531 5.82593 5.87466 6.18056 6.26185 6.32465 6.70888 6.81233 6.96337 7.02893 8.32564 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.050588 B = 0.008306 C = 0.007277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.361546 B = 3370.437159 C = 3847.020519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.491 4.491 8 H 0.080 0.920 9 C 0.094 3.906 10 C -0.213 4.213 11 C -0.104 4.104 12 C -0.219 4.219 13 C -0.088 4.088 14 C -0.171 4.171 15 Cl -0.055 7.055 16 C 0.075 3.925 17 N -0.567 5.567 18 H 0.424 0.576 19 C 0.002 3.998 20 H 0.288 0.712 21 H 0.106 0.894 22 H 0.110 0.890 23 H 0.105 0.895 24 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 -4.331 2.090 7.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.091 3.909 10 C -0.235 4.235 11 C -0.122 4.122 12 C -0.239 4.239 13 C -0.093 4.093 14 C -0.206 4.206 15 Cl -0.027 7.027 16 C -0.056 4.056 17 N -0.169 5.169 18 H 0.263 0.737 19 C -0.104 4.104 20 H 0.099 0.901 21 H 0.123 0.877 22 H 0.128 0.872 23 H 0.123 0.877 24 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.148 -4.224 2.152 6.998 hybrid contribution 0.108 0.820 0.051 0.829 sum 5.256 -3.404 2.204 6.638 Atomic orbital electron populations 1.69914 1.09092 1.30546 1.34825 1.26720 0.95427 1.04441 0.91425 0.85153 0.79473 0.76275 0.78780 1.17902 1.19236 1.19236 1.19615 0.98228 0.92235 1.41937 0.90177 1.17046 0.93157 0.89627 0.91097 1.20887 1.01235 0.97070 1.04311 1.20734 0.99086 0.92523 0.99894 1.19970 1.00374 0.96620 1.06975 1.18992 0.97934 0.91156 1.01169 1.20831 1.03703 0.84074 1.11996 1.98233 1.94592 1.12042 1.97784 1.21894 0.99725 0.82550 1.01470 1.41293 1.26540 1.06373 1.42669 0.73738 1.18574 0.94827 0.94879 1.02088 0.90084 0.87659 0.87163 0.87665 0.77055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.98 10.97 21.83 0.24 -41.74 14 2 C 0.04 1.73 5.13 85.25 0.44 2.16 14 3 Si 0.98 36.58 29.60 68.60 2.03 38.61 14 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 14 5 H -0.27 -9.75 7.11 99.48 0.71 -9.05 14 6 H -0.27 -9.59 7.11 99.48 0.71 -8.88 14 7 C -0.49 -25.05 9.04 23.35 0.21 -24.84 14 8 H 0.08 3.80 7.91 -2.91 -0.02 3.77 14 9 C 0.09 5.01 5.58 -21.23 -0.12 4.89 14 10 C -0.21 -11.42 8.68 22.78 0.20 -11.22 14 11 C -0.10 -5.05 10.00 22.20 0.22 -4.83 14 12 C -0.22 -10.38 10.10 22.67 0.23 -10.15 14 13 C -0.09 -4.12 6.37 -20.20 -0.13 -4.25 14 14 C -0.17 -6.59 6.92 23.57 0.16 -6.43 14 15 Cl -0.05 -1.80 29.32 -2.72 -0.08 -1.88 14 16 C 0.07 2.44 11.81 83.03 0.98 3.42 14 17 N -0.57 -21.34 6.03 -186.46 -1.12 -22.46 14 18 H 0.42 13.53 8.96 -92.71 -0.83 12.70 14 19 C 0.00 0.12 7.00 39.65 0.28 0.39 14 20 H 0.29 13.34 8.30 -92.71 -0.77 12.57 14 21 H 0.11 5.84 6.15 -2.91 -0.02 5.82 14 22 H 0.11 4.74 8.06 -2.91 -0.02 4.72 14 23 H 0.11 4.54 8.06 -2.91 -0.02 4.52 14 24 H 0.21 4.59 8.06 -2.91 -0.02 4.57 14 Total: -1.00 -59.96 233.36 3.95 -56.02 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.41 Total: 22.28 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 2.47 Total: -50.84 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.89 Total: -64.20 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -59.96 3.95 -56.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214615050.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.408 kcal (2) G-P(sol) polarization free energy of solvation -59.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds