Wall clock time and date at job start Mon Mar 30 2020 03:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86804 * 119.99686 * 2 1 4 4 H 1.48497 * 109.46927 * 269.99546 * 3 2 1 5 5 H 1.48497 * 109.47229 * 29.99794 * 3 2 1 6 6 H 1.48505 * 109.46820 * 149.99628 * 3 2 1 7 7 C 1.40171 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.39910 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.39140 * 125.69446 * 0.02562 * 9 7 2 11 11 C 1.40898 * 107.50619 * 179.97438 * 10 9 7 12 12 C 1.41214 * 107.28453 * 0.02562 * 11 10 9 13 13 C 1.38876 * 119.38875 * 179.97438 * 12 11 10 14 14 C 1.38033 * 119.92364 * 359.97438 * 13 12 11 15 15 C 1.38844 * 120.71720 * 359.97438 * 14 13 12 16 16 C 1.36614 * 120.57670 * 0.26154 * 15 14 13 17 17 Cl 1.73589 * 120.11527 * 179.74575 * 16 15 14 18 18 N 1.38074 * 107.81173 * 359.97438 * 12 11 10 19 19 H 0.97002 * 125.60179 * 179.97438 * 18 12 11 20 20 H 0.96997 * 120.00181 * 0.02562 * 1 2 3 21 21 H 1.08004 * 126.25148 * 359.97438 * 10 9 7 22 22 H 1.08008 * 120.03638 * 179.97438 * 13 12 11 23 23 H 1.07999 * 119.64024 * 180.02562 * 14 13 12 24 24 H 1.08002 * 119.70878 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4891 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5391 1.4403 0.7002 7 6 2.0085 -1.2139 0.0005 8 1 3.0885 -1.2138 0.0010 9 6 1.3090 -2.4256 0.0005 10 6 -0.0755 -2.5637 -0.0005 11 6 -0.3638 -3.9429 -0.0007 12 6 0.8702 -4.6295 0.0008 13 6 0.8773 -6.0182 0.0015 14 6 -0.3154 -6.7130 0.0012 15 6 -1.5290 -6.0385 0.0008 16 6 -1.5651 -4.6728 -0.0047 17 17 -3.0892 -3.8419 -0.0118 18 7 1.8784 -3.6862 0.0013 19 1 2.8296 -3.8763 0.0027 20 1 -0.4850 0.8400 -0.0004 21 1 -0.7974 -1.7604 -0.0010 22 1 1.8151 -6.5540 0.0022 23 1 -0.3045 -7.7929 0.0022 24 1 -2.4526 -6.5984 0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214615291.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:01 Heat of formation + Delta-G solvation = 13.257534 kcal Electronic energy + Delta-G solvation = -12208.286205 eV Core-core repulsion = 9918.269299 eV Total energy + Delta-G solvation = -2290.016906 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.48985 -37.86861 -36.79857 -35.37796 -32.19895 -30.68587 -29.46206 -27.03393 -23.16410 -22.29687 -21.33200 -19.32929 -18.01692 -17.35991 -16.20388 -15.80479 -15.05241 -15.00797 -14.87339 -14.14729 -13.49497 -13.36701 -13.15696 -12.89688 -12.64587 -12.14883 -11.85614 -11.82168 -11.66160 -11.47574 -11.17062 -10.07477 -9.05169 -8.54752 -8.29587 -6.35513 0.41017 0.96480 1.41061 1.43358 1.56726 1.61190 2.16385 2.23949 2.80285 3.17351 3.38604 4.26097 4.38449 4.57427 4.81033 4.93721 5.05813 5.19836 5.40112 5.69694 5.74551 5.83796 5.87252 6.10058 6.37115 6.72361 6.75369 7.05003 7.36554 8.31131 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.037350 B = 0.009365 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.480848 B = 2989.002960 C = 3728.638879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.027 3.973 3 Si 1.006 2.994 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.468 4.468 8 H 0.091 0.909 9 C 0.240 3.760 10 C -0.356 4.356 11 C -0.075 4.075 12 C 0.030 3.970 13 C -0.113 4.113 14 C -0.156 4.156 15 C -0.126 4.126 16 C -0.068 4.068 17 Cl -0.101 7.101 18 N -0.620 5.620 19 H 0.414 0.586 20 H 0.288 0.712 21 H 0.146 0.854 22 H 0.138 0.862 23 H 0.156 0.844 24 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 -4.925 0.006 5.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.190 4.190 3 Si 0.826 3.174 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.501 4.501 8 H 0.109 0.891 9 C 0.133 3.867 10 C -0.379 4.379 11 C -0.081 4.081 12 C -0.075 4.075 13 C -0.134 4.134 14 C -0.175 4.175 15 C -0.146 4.146 16 C -0.095 4.095 17 Cl -0.072 7.072 18 N -0.230 5.230 19 H 0.252 0.748 20 H 0.099 0.901 21 H 0.164 0.836 22 H 0.156 0.844 23 H 0.174 0.826 24 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.523 -4.715 0.010 4.955 hybrid contribution 0.326 0.832 -0.010 0.894 sum 1.849 -3.883 0.000 4.301 Atomic orbital electron populations 1.69837 1.09188 1.30220 1.34033 1.26884 0.95698 1.04755 0.91679 0.84836 0.78583 0.74550 0.79476 1.18666 1.19391 1.17653 1.19121 0.95233 0.89253 1.46481 0.89053 1.18450 0.91911 0.83668 0.92658 1.21713 0.95186 0.93341 1.27629 1.18516 0.91665 0.95294 1.02578 1.18483 0.87713 0.91330 1.09959 1.20296 0.99805 0.89057 1.04271 1.20729 0.89988 1.00110 1.06678 1.20562 0.99685 0.90836 1.03539 1.20242 0.84106 0.92478 1.12711 1.98251 1.31276 1.80324 1.97389 1.42091 1.06996 1.04406 1.69533 0.74844 0.90063 0.83633 0.84391 0.82610 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.05 10.18 21.87 0.22 -41.83 14 2 C 0.03 1.29 5.50 85.32 0.47 1.76 14 3 Si 1.01 36.26 29.56 68.60 2.03 38.29 14 4 H -0.26 -9.13 7.11 99.48 0.71 -8.43 14 5 H -0.27 -9.40 7.11 99.48 0.71 -8.69 14 6 H -0.25 -8.65 7.11 99.48 0.71 -7.94 14 7 C -0.47 -23.76 9.45 23.14 0.22 -23.54 14 8 H 0.09 4.19 7.85 -2.91 -0.02 4.17 14 9 C 0.24 12.77 6.83 38.74 0.26 13.03 14 10 C -0.36 -20.04 9.63 23.14 0.22 -19.82 14 11 C -0.07 -3.82 6.03 -21.33 -0.13 -3.95 14 12 C 0.03 1.36 7.24 39.04 0.28 1.64 14 13 C -0.11 -4.11 10.07 22.37 0.23 -3.89 14 14 C -0.16 -5.17 10.02 22.37 0.22 -4.95 14 15 C -0.13 -4.68 9.74 22.03 0.21 -4.47 14 16 C -0.07 -3.08 6.34 22.46 0.14 -2.94 14 17 Cl -0.10 -4.26 28.84 -2.72 -0.08 -4.34 14 18 N -0.62 -28.13 6.22 -180.16 -1.12 -29.25 14 19 H 0.41 15.47 8.96 -92.71 -0.83 14.64 14 20 H 0.29 13.56 8.29 -92.71 -0.77 12.79 14 21 H 0.15 8.78 5.58 -2.91 -0.02 8.77 14 22 H 0.14 3.99 8.06 -2.91 -0.02 3.97 14 23 H 0.16 3.79 8.06 -2.91 -0.02 3.77 14 24 H 0.14 4.27 8.06 -2.91 -0.02 4.25 14 Total: -1.00 -60.57 231.82 3.60 -56.97 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.41 Total: 27.29 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 2.14 Total: -47.12 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -0.90 Total: -71.08 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Atomic # 17 Polarization: -4.26 SS G_CDS: -0.08 Total: -4.34 kcal Total: -60.57 3.60 -56.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214615291.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.226 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds