Wall clock time and date at job start Mon Mar 30 2020 03:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86794 * 119.99604 * 2 1 4 4 H 1.48501 * 109.46881 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47342 * 299.99645 * 3 2 1 6 6 H 1.48503 * 109.47492 * 59.99838 * 3 2 1 7 7 C 1.39860 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99618 * 197.55221 * 7 2 1 9 9 C 1.41250 * 120.00026 * 17.55053 * 7 2 1 10 10 C 1.41151 * 120.10003 * 25.29544 * 9 7 2 11 11 C 1.35964 * 120.58742 * 180.02562 * 10 9 7 12 12 C 1.39770 * 120.42628 * 359.96717 * 11 10 9 13 13 N 1.37356 * 133.08953 * 180.02562 * 12 11 10 14 14 H 0.97000 * 124.98927 * 359.92913 * 13 12 11 15 15 C 1.36874 * 110.01446 * 179.97438 * 13 12 11 16 16 C 1.34176 * 109.97806 * 359.97438 * 15 13 12 17 17 C 1.40952 * 119.81905 * 359.97438 * 12 11 10 18 18 C 1.39188 * 120.09045 * 0.02562 * 17 12 11 19 19 Cl 1.73604 * 120.36118 * 179.72610 * 18 17 12 20 20 H 0.96994 * 120.00096 * 0.02562 * 1 2 3 21 21 H 1.07996 * 119.70282 * 0.02562 * 10 9 7 22 22 H 1.08006 * 119.78403 * 179.97438 * 11 10 9 23 23 H 1.07999 * 125.01026 * 179.97438 * 15 13 12 24 24 H 1.08005 * 126.55494 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8843 2.3965 -1.2126 6 1 1.8843 2.3965 1.2125 7 6 2.0085 -1.2112 0.0005 8 1 3.0507 -1.2329 0.2826 9 6 1.3515 -2.4062 -0.3678 10 6 0.2246 -2.3618 -1.2166 11 6 -0.4156 -3.5058 -1.5771 12 6 0.0337 -4.7449 -1.1121 13 7 -0.4015 -6.0334 -1.3047 14 1 -1.1637 -6.2877 -1.8481 15 6 0.3978 -6.9057 -0.6164 16 6 1.3593 -6.2317 0.0328 17 6 1.1581 -4.8098 -0.2646 18 6 1.8188 -3.6430 0.1088 19 17 3.2000 -3.7142 1.1580 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1322 -1.4106 -1.5831 22 1 -1.2769 -3.4567 -2.2269 23 1 0.2729 -7.9783 -0.5985 24 1 2.1331 -6.6552 0.6560 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214615447.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:59 Heat of formation + Delta-G solvation = 20.575686 kcal Electronic energy + Delta-G solvation = -12288.139108 eV Core-core repulsion = 9998.439541 eV Total energy + Delta-G solvation = -2289.699567 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.54189 -37.98843 -36.57574 -34.88356 -32.26539 -30.79339 -29.08269 -26.76176 -22.99946 -22.37820 -21.26335 -19.08662 -18.41801 -17.07707 -16.62910 -15.45866 -15.04653 -14.95774 -14.70811 -13.95589 -13.68940 -13.29656 -13.13508 -12.76369 -12.69209 -12.46881 -11.94823 -11.53572 -11.42246 -11.09298 -10.90314 -10.05440 -8.91098 -8.67598 -8.26663 -6.19455 0.61001 1.07104 1.41173 1.53735 1.56344 2.04845 2.14596 2.24945 2.66257 2.74516 3.67303 4.29121 4.39822 4.63716 4.77361 5.03891 5.10304 5.23356 5.45200 5.54673 5.69807 5.96716 6.08285 6.18836 6.41070 6.61070 6.92446 6.96802 7.12529 8.35976 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.038537 B = 0.010403 C = 0.008376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.403534 B = 2690.992230 C = 3342.171314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.039 3.961 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.267 1.267 7 C -0.481 4.481 8 H 0.076 0.924 9 C 0.076 3.924 10 C -0.129 4.129 11 C -0.117 4.117 12 C -0.005 4.005 13 N -0.583 5.583 14 H 0.424 0.576 15 C 0.067 3.933 16 C -0.257 4.257 17 C -0.085 4.085 18 C -0.155 4.155 19 Cl -0.113 7.113 20 H 0.289 0.711 21 H 0.120 0.880 22 H 0.124 0.876 23 H 0.212 0.788 24 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 -6.609 -2.710 7.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.511 4.511 8 H 0.094 0.906 9 C 0.072 3.928 10 C -0.149 4.149 11 C -0.137 4.137 12 C -0.110 4.110 13 N -0.188 5.188 14 H 0.262 0.738 15 C -0.061 4.061 16 C -0.284 4.284 17 C -0.091 4.091 18 C -0.184 4.184 19 Cl -0.085 7.085 20 H 0.099 0.901 21 H 0.138 0.862 22 H 0.142 0.858 23 H 0.229 0.771 24 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.696 -6.487 -2.683 7.222 hybrid contribution 0.184 0.804 0.090 0.829 sum -1.512 -5.684 -2.593 6.428 Atomic orbital electron populations 1.69881 1.08671 1.30509 1.36161 1.26652 0.95482 1.04142 0.91307 0.85229 0.79384 0.76554 0.79015 1.18679 1.18455 1.19223 1.19695 0.98310 0.91848 1.41233 0.90601 1.17615 0.92500 0.91563 0.91088 1.20865 0.97601 0.97230 0.99249 1.19786 1.01290 0.89627 1.02998 1.17948 0.99685 0.86419 1.06925 1.41409 1.29114 1.03275 1.45042 0.73788 1.22210 0.91898 0.96621 0.95377 1.21701 1.05353 0.90525 1.10772 1.19029 0.96498 0.93283 1.00241 1.20275 0.97288 0.93695 1.07178 1.98148 1.44559 1.98693 1.67080 0.90052 0.86184 0.85821 0.77142 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.57 10.98 21.82 0.24 -42.33 14 2 C 0.04 1.96 5.13 85.22 0.44 2.40 14 3 Si 0.98 38.88 29.59 68.60 2.03 40.91 14 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 14 5 H -0.26 -9.75 7.11 99.48 0.71 -9.04 14 6 H -0.27 -10.24 7.11 99.48 0.71 -9.53 14 7 C -0.48 -26.44 8.51 23.40 0.20 -26.24 14 8 H 0.08 4.18 7.12 -2.91 -0.02 4.16 14 9 C 0.08 4.18 5.57 -21.26 -0.12 4.06 14 10 C -0.13 -6.66 8.60 22.46 0.19 -6.46 14 11 C -0.12 -5.19 9.99 22.11 0.22 -4.96 14 12 C 0.00 -0.20 7.28 39.31 0.29 0.09 14 13 N -0.58 -18.26 6.05 -187.14 -1.13 -19.39 14 14 H 0.42 9.64 8.96 -92.71 -0.83 8.81 14 15 C 0.07 1.94 11.81 82.98 0.98 2.92 14 16 C -0.26 -9.73 11.00 23.54 0.26 -9.47 14 17 C -0.09 -4.02 6.20 -20.19 -0.13 -4.15 14 18 C -0.16 -8.12 6.41 23.06 0.15 -7.97 14 19 Cl -0.11 -5.38 27.54 -2.72 -0.07 -5.46 14 20 H 0.29 13.37 8.30 -92.71 -0.77 12.60 14 21 H 0.12 6.29 6.17 -2.91 -0.02 6.27 14 22 H 0.12 4.60 8.06 -2.91 -0.02 4.57 14 23 H 0.21 3.61 8.06 -2.91 -0.02 3.59 14 24 H 0.14 4.88 8.06 -2.91 -0.02 4.85 14 Total: -1.00 -63.56 230.71 3.95 -59.60 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.41 Total: 16.48 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 2.48 Total: -49.80 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.89 Total: -61.73 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 17 Polarization: -5.38 SS G_CDS: -0.07 Total: -5.46 kcal Total: -63.56 3.95 -59.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214615447.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.177 kcal (2) G-P(sol) polarization free energy of solvation -63.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds