Wall clock time and date at job start Mon Mar 30 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99579 * 2 1 4 4 N 1.45398 * 110.99771 * 123.94833 * 2 1 3 5 5 C 1.46896 * 111.00143 * 114.64438 * 4 2 1 6 6 H 1.09002 * 109.47331 * 185.79992 * 5 4 2 7 7 C 1.50700 * 109.47022 * 305.80103 * 5 4 2 8 8 H 1.07999 * 120.00300 * 119.99510 * 7 5 4 9 9 C 1.37881 * 119.99850 * 299.72592 * 7 5 4 10 10 N 1.31512 * 119.99926 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 120.00252 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47091 * 59.99348 * 11 9 7 13 13 H 1.48491 * 109.47194 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46727 * 299.99915 * 11 9 7 15 15 C 1.50703 * 109.47241 * 65.79729 * 5 4 2 16 16 C 1.38231 * 119.99879 * 301.40110 * 15 5 4 17 17 C 1.38234 * 119.99862 * 179.80686 * 16 15 5 18 18 C 1.38234 * 119.99971 * 0.40045 * 17 16 15 19 19 C 1.38237 * 120.00046 * 359.85265 * 18 17 16 20 20 C 1.38229 * 119.99944 * 121.67060 * 15 5 4 21 21 H 1.08998 * 109.47601 * 296.04926 * 1 2 3 22 22 H 1.09001 * 109.47176 * 56.05612 * 1 2 3 23 23 H 1.09005 * 109.46542 * 176.04737 * 1 2 3 24 24 H 1.09006 * 109.47252 * 183.94999 * 3 2 1 25 25 H 1.09005 * 109.47296 * 303.94513 * 3 2 1 26 26 H 1.09000 * 109.47709 * 63.94954 * 3 2 1 27 27 H 1.00908 * 110.99928 * 238.59529 * 4 2 1 28 28 H 0.96998 * 120.00065 * 179.97438 * 10 9 7 29 29 H 1.07999 * 120.00157 * 359.97438 * 16 15 5 30 30 H 1.08007 * 120.00148 * 180.22627 * 17 16 15 31 31 H 1.07999 * 120.00117 * 179.83057 * 18 17 16 32 32 H 1.08000 * 120.00034 * 179.97438 * 19 18 17 33 33 H 1.07997 * 120.00096 * 359.97438 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 7 1.9900 -0.7580 1.1260 5 6 2.7125 -1.9521 0.6677 6 1 3.0025 -2.5542 1.5288 7 6 1.8197 -2.7638 -0.2351 8 1 2.1156 -2.9568 -1.2557 9 6 0.6276 -3.2648 0.2436 10 7 0.2701 -3.0347 1.4881 11 14 -0.4796 -4.2703 -0.8756 12 1 0.2528 -5.4739 -1.3450 13 1 -1.6912 -4.6895 -0.1265 14 1 -0.8800 -3.4473 -2.0450 15 6 3.9457 -1.5329 -0.0904 16 6 3.8291 -0.7330 -1.2117 17 6 4.9606 -0.3453 -1.9048 18 6 6.2080 -0.7642 -1.4813 19 6 6.3242 -1.5684 -0.3629 20 6 5.1930 -1.9529 0.3324 21 1 -0.3634 0.4513 0.9232 22 1 -0.3633 0.5738 -0.8525 23 1 -0.3632 -1.0253 -0.0708 24 1 3.0827 1.3433 -0.0708 25 1 1.5898 1.9163 -0.8525 26 1 1.7042 1.8724 0.9232 27 1 2.5779 -0.1813 1.7092 28 1 -0.5687 -3.3868 1.8247 29 1 2.8543 -0.4088 -1.5448 30 1 4.8698 0.2827 -2.7788 31 1 7.0918 -0.4635 -2.0243 32 1 7.2987 -1.8961 -0.0323 33 1 5.2838 -2.5811 1.2061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214864263.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:55 Heat of formation + Delta-G solvation = 71.977332 kcal Electronic energy + Delta-G solvation = -15398.871084 eV Core-core repulsion = 13040.076146 eV Total energy + Delta-G solvation = -2358.794938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.62846 -36.14160 -33.18013 -31.41253 -30.10848 -28.78482 -26.69167 -25.72819 -22.94490 -21.70672 -21.28904 -19.70153 -16.30735 -16.02775 -15.15867 -14.70652 -14.47333 -14.08097 -13.78812 -13.53692 -12.58995 -12.40081 -12.27079 -12.12286 -11.67928 -11.57894 -11.08161 -10.94372 -10.73589 -10.46869 -10.43102 -10.22028 -9.77230 -9.18874 -8.33970 -8.15828 -8.09544 -7.84019 -6.61575 -5.82461 -3.89906 2.14402 2.19486 3.38171 3.42620 3.46973 4.42506 4.56117 4.71581 5.42817 5.54317 5.62870 5.70986 5.77248 5.95760 6.09342 6.15699 6.29886 6.30963 6.43644 6.60613 6.61923 6.78406 6.86758 7.18643 7.21740 7.25173 7.33799 7.74398 7.84431 7.96556 8.03615 8.23966 8.47648 9.00736 9.17396 9.73321 11.22541 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.011474 C = 0.009655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.628330 B = 2439.768150 C = 2899.338688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.362 5.362 3 C -0.004 4.004 4 N -0.484 5.484 5 C 0.257 3.743 6 H 0.054 0.946 7 C -0.493 4.493 8 H 0.053 0.947 9 C 0.081 3.919 10 N -0.858 5.858 11 Si 0.876 3.124 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.076 4.076 16 C -0.097 4.097 17 C -0.141 4.141 18 C -0.146 4.146 19 C -0.135 4.135 20 C -0.129 4.129 21 H 0.011 0.989 22 H 0.041 0.959 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.291 0.709 28 H 0.254 0.746 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 5.968 -2.750 8.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.175 5.175 3 C -0.154 4.154 4 N -0.204 5.204 5 C 0.150 3.850 6 H 0.071 0.929 7 C -0.533 4.533 8 H 0.071 0.929 9 C -0.124 4.124 10 N -0.494 5.494 11 Si 0.704 3.296 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.079 4.079 16 C -0.115 4.115 17 C -0.159 4.159 18 C -0.164 4.164 19 C -0.153 4.153 20 C -0.148 4.148 21 H 0.030 0.970 22 H 0.059 0.941 23 H 0.107 0.893 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.165 0.835 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.886 5.361 -2.910 7.815 hybrid contribution 0.016 0.330 -0.246 0.412 sum 4.902 5.691 -3.156 8.147 Atomic orbital electron populations 1.22243 0.87351 1.03324 0.96921 1.65090 1.07962 1.08239 1.36238 1.22894 1.00607 0.92233 0.99634 1.64713 1.40367 1.04543 1.10756 1.18466 0.85265 0.87504 0.93799 0.92870 1.20655 1.04024 1.31356 0.97227 0.92884 1.24859 0.97434 0.95426 0.94637 1.70080 1.21950 1.43506 1.13881 0.86955 0.80426 0.80969 0.81263 1.20508 1.21555 1.20278 1.21502 0.96559 0.94151 0.95644 1.21698 0.99141 0.96405 0.94254 1.21171 0.93243 1.01414 1.00073 1.20888 0.96962 1.00635 0.97941 1.20950 0.97857 0.99810 0.96716 1.21172 0.92664 1.00659 1.00267 0.97048 0.94058 0.89323 0.92041 0.92073 0.96491 0.89354 0.93578 0.83512 0.87559 0.87735 0.87549 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.06 9.90 60.07 0.59 1.65 16 2 N -0.36 -7.55 2.17 -128.55 -0.28 -7.83 16 3 C 0.00 -0.06 8.59 60.06 0.52 0.45 16 4 N -0.48 -11.03 5.93 -6.65 -0.04 -11.07 16 5 C 0.26 6.18 2.76 -70.02 -0.19 5.99 16 6 H 0.05 1.39 7.88 -51.93 -0.41 0.98 16 7 C -0.49 -13.08 7.46 -34.44 -0.26 -13.34 16 8 H 0.05 1.46 7.64 -52.49 -0.40 1.06 16 9 C 0.08 2.16 3.68 -17.82 -0.07 2.09 16 10 N -0.86 -23.68 12.58 55.43 0.70 -22.98 16 11 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.08 -1.62 4.88 -104.63 -0.51 -2.13 16 16 C -0.10 -1.94 6.89 -39.59 -0.27 -2.21 16 17 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 18 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16 19 C -0.14 -2.30 10.05 -39.58 -0.40 -2.70 16 20 C -0.13 -2.48 9.67 -39.59 -0.38 -2.86 16 21 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 23 H 0.09 2.14 5.96 -51.93 -0.31 1.83 16 24 H 0.06 1.04 6.77 -51.93 -0.35 0.69 16 25 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.29 6.19 8.14 -174.65 -1.42 4.77 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.15 3.10 5.60 -52.49 -0.29 2.81 16 30 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.11 2.03 7.95 -52.49 -0.42 1.62 16 LS Contribution 270.44 15.07 4.08 4.08 Total: -1.00 -27.55 270.44 -8.03 -35.57 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.69 Total: 5.01 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -1.76 Total: -18.72 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.38 Total: -41.88 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.55 -8.03 -35.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214864263.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.551 kcal (2) G-P(sol) polarization free energy of solvation -27.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds