Wall clock time and date at job start Mon Mar 30 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99579 * 2 1 4 4 N 1.45398 * 110.99771 * 123.94833 * 2 1 3 5 5 C 1.46896 * 111.00143 * 114.64438 * 4 2 1 6 6 H 1.09002 * 109.47331 * 185.79992 * 5 4 2 7 7 C 1.50700 * 109.47022 * 305.80103 * 5 4 2 8 8 H 1.07999 * 120.00300 * 119.99510 * 7 5 4 9 9 C 1.37881 * 119.99850 * 299.72592 * 7 5 4 10 10 N 1.31512 * 119.99926 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 120.00252 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47091 * 59.99348 * 11 9 7 13 13 H 1.48491 * 109.47194 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46727 * 299.99915 * 11 9 7 15 15 C 1.50703 * 109.47241 * 65.79729 * 5 4 2 16 16 C 1.38231 * 119.99879 * 301.40110 * 15 5 4 17 17 C 1.38234 * 119.99862 * 179.80686 * 16 15 5 18 18 C 1.38234 * 119.99971 * 0.40045 * 17 16 15 19 19 C 1.38237 * 120.00046 * 359.85265 * 18 17 16 20 20 C 1.38229 * 119.99944 * 121.67060 * 15 5 4 21 21 H 1.08998 * 109.47601 * 296.04926 * 1 2 3 22 22 H 1.09001 * 109.47176 * 56.05612 * 1 2 3 23 23 H 1.09005 * 109.46542 * 176.04737 * 1 2 3 24 24 H 1.09006 * 109.47252 * 183.94999 * 3 2 1 25 25 H 1.09005 * 109.47296 * 303.94513 * 3 2 1 26 26 H 1.09000 * 109.47709 * 63.94954 * 3 2 1 27 27 H 1.00908 * 110.99928 * 238.59529 * 4 2 1 28 28 H 0.96998 * 120.00065 * 179.97438 * 10 9 7 29 29 H 1.07999 * 120.00157 * 359.97438 * 16 15 5 30 30 H 1.08007 * 120.00148 * 180.22627 * 17 16 15 31 31 H 1.07999 * 120.00117 * 179.83057 * 18 17 16 32 32 H 1.08000 * 120.00034 * 179.97438 * 19 18 17 33 33 H 1.07997 * 120.00096 * 359.97438 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 7 1.9900 -0.7580 1.1260 5 6 2.7125 -1.9521 0.6677 6 1 3.0025 -2.5542 1.5288 7 6 1.8197 -2.7638 -0.2351 8 1 2.1156 -2.9568 -1.2557 9 6 0.6276 -3.2648 0.2436 10 7 0.2701 -3.0347 1.4881 11 14 -0.4796 -4.2703 -0.8756 12 1 0.2528 -5.4739 -1.3450 13 1 -1.6912 -4.6895 -0.1265 14 1 -0.8800 -3.4473 -2.0450 15 6 3.9457 -1.5329 -0.0904 16 6 3.8291 -0.7330 -1.2117 17 6 4.9606 -0.3453 -1.9048 18 6 6.2080 -0.7642 -1.4813 19 6 6.3242 -1.5684 -0.3629 20 6 5.1930 -1.9529 0.3324 21 1 -0.3634 0.4513 0.9232 22 1 -0.3633 0.5738 -0.8525 23 1 -0.3632 -1.0253 -0.0708 24 1 3.0827 1.3433 -0.0708 25 1 1.5898 1.9163 -0.8525 26 1 1.7042 1.8724 0.9232 27 1 2.5779 -0.1813 1.7092 28 1 -0.5687 -3.3868 1.8247 29 1 2.8543 -0.4088 -1.5448 30 1 4.8698 0.2827 -2.7788 31 1 7.0918 -0.4635 -2.0243 32 1 7.2987 -1.8961 -0.0323 33 1 5.2838 -2.5811 1.2061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214864263.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:55 Heat of formation + Delta-G solvation = 56.633610 kcal Electronic energy + Delta-G solvation = -15399.536438 eV Core-core repulsion = 13040.076146 eV Total energy + Delta-G solvation = -2359.460291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12315 -37.74831 -34.99169 -33.24321 -31.52106 -30.34755 -28.32648 -27.56039 -24.66531 -23.15248 -22.84614 -21.35935 -18.22505 -17.53607 -16.90027 -16.36210 -16.16158 -15.67246 -15.28970 -15.07961 -14.21414 -14.02295 -13.84646 -13.69562 -13.28933 -13.10313 -12.89831 -12.68550 -12.37577 -12.19973 -12.17279 -11.69147 -11.55218 -11.14620 -10.35330 -9.80474 -9.57345 -9.34007 -8.28888 -7.87391 -5.99994 0.71549 0.77456 1.45221 1.46747 1.52750 2.53080 2.86384 3.22496 3.40868 4.24324 4.26881 4.32114 4.40916 4.54930 4.60695 4.66696 4.88440 4.90645 4.96564 4.99397 5.02135 5.26970 5.40416 5.45857 5.56351 5.78141 5.84585 5.90006 6.18251 6.25319 6.37532 6.47236 6.64273 7.07137 7.36312 7.66250 9.16115 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.011474 C = 0.009655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.628330 B = 2439.768150 C = 2899.338688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.370 5.370 3 C 0.003 3.997 4 N -0.498 5.498 5 C 0.263 3.737 6 H 0.019 0.981 7 C -0.499 4.499 8 H 0.037 0.963 9 C 0.047 3.953 10 N -0.882 5.882 11 Si 0.926 3.074 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.274 1.274 15 C -0.101 4.101 16 C -0.109 4.109 17 C -0.139 4.139 18 C -0.138 4.138 19 C -0.131 4.131 20 C -0.145 4.145 21 H 0.007 0.993 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.022 0.978 27 H 0.296 0.704 28 H 0.251 0.749 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 7.113 -4.264 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.184 5.184 3 C -0.146 4.146 4 N -0.218 5.218 5 C 0.155 3.845 6 H 0.036 0.964 7 C -0.538 4.538 8 H 0.055 0.945 9 C -0.155 4.155 10 N -0.519 5.519 11 Si 0.753 3.247 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.103 4.103 16 C -0.127 4.127 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.164 4.164 21 H 0.025 0.975 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.040 0.960 27 H 0.112 0.888 28 H 0.061 0.939 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.317 6.510 -4.431 10.096 hybrid contribution -0.341 0.026 0.193 0.393 sum 5.976 6.536 -4.238 9.818 Atomic orbital electron populations 1.22157 0.87672 1.01574 0.98002 1.65001 1.07693 1.10346 1.35381 1.22876 1.00656 0.90217 1.00873 1.64466 1.40462 1.04945 1.11942 1.18084 0.86483 0.87545 0.92354 0.96377 1.20777 1.04602 1.31705 0.96742 0.94468 1.25340 0.98392 0.96231 0.95546 1.70185 1.22085 1.44563 1.15090 0.86160 0.78976 0.79661 0.79900 1.20572 1.21382 1.19947 1.21240 0.96092 0.96220 0.96743 1.21566 0.99644 0.97084 0.94452 1.21462 0.92770 1.01109 1.00370 1.21335 0.97857 0.99044 0.97336 1.21297 0.98273 0.98987 0.96318 1.21288 0.92987 1.01194 1.00932 0.97466 0.91081 0.92795 0.91885 0.89718 0.95955 0.88790 0.93948 0.84997 0.84826 0.83944 0.84404 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.29 9.90 127.69 1.26 3.56 16 2 N -0.37 -15.36 2.17 -560.61 -1.22 -16.57 16 3 C 0.00 0.10 8.59 127.69 1.10 1.20 16 4 N -0.50 -23.21 5.93 -174.95 -1.04 -24.24 16 5 C 0.26 13.08 2.76 43.42 0.12 13.20 16 6 H 0.02 1.02 7.88 -2.39 -0.02 1.00 16 7 C -0.50 -27.19 7.46 25.60 0.19 -27.00 16 8 H 0.04 2.10 7.64 -2.91 -0.02 2.07 16 9 C 0.05 2.57 3.68 84.66 0.31 2.88 16 10 N -0.88 -50.08 12.58 21.45 0.27 -49.81 16 11 Si 0.93 43.75 29.54 68.60 2.03 45.78 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 15 C -0.10 -4.31 4.88 -19.87 -0.10 -4.41 16 16 C -0.11 -4.26 6.89 22.27 0.15 -4.10 16 17 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 18 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 19 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 20 C -0.15 -5.51 9.67 22.27 0.22 -5.30 16 21 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 22 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 23 H 0.05 2.63 5.96 -2.38 -0.01 2.62 16 24 H 0.06 2.04 6.77 -2.38 -0.02 2.02 16 25 H 0.08 2.36 8.12 -2.38 -0.02 2.34 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.30 12.88 8.14 -204.84 -1.67 11.22 16 28 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.13 5.50 5.60 -2.91 -0.02 5.48 16 30 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 33 H 0.11 4.08 7.95 -2.91 -0.02 4.05 16 Total: -1.00 -59.98 270.44 3.39 -56.59 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.58 Total: 20.01 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.93 Total: -31.75 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -1.98 Total: -90.62 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -59.98 3.39 -56.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214864263.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.225 kcal (2) G-P(sol) polarization free energy of solvation -59.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds