Wall clock time and date at job start Mon Mar 30 2020 03:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99859 * 2 1 4 4 N 1.45394 * 110.99827 * 123.95332 * 2 1 3 5 5 C 1.46905 * 110.99945 * 120.95994 * 4 2 1 6 6 H 1.08997 * 109.47371 * 174.49933 * 5 4 2 7 7 C 1.50695 * 109.47408 * 54.49480 * 5 4 2 8 8 H 1.07997 * 120.00295 * 240.00629 * 7 5 4 9 9 C 1.37884 * 119.99787 * 60.00217 * 7 5 4 10 10 N 1.31508 * 120.00039 * 180.02562 * 9 7 5 11 11 Si 1.86800 * 119.99899 * 359.97438 * 9 7 5 12 12 H 1.48508 * 109.46779 * 90.00004 * 11 9 7 13 13 H 1.48500 * 109.47190 * 209.99722 * 11 9 7 14 14 H 1.48498 * 109.47171 * 330.00159 * 11 9 7 15 15 C 1.50701 * 109.46613 * 294.49864 * 5 4 2 16 16 C 1.38239 * 119.99745 * 234.26760 * 15 5 4 17 17 C 1.38236 * 119.99823 * 180.02562 * 16 15 5 18 18 C 1.38230 * 120.00088 * 359.95699 * 17 16 15 19 19 C 1.38234 * 120.00094 * 359.97438 * 18 17 16 20 20 C 1.38232 * 120.00050 * 0.07305 * 19 18 17 21 21 H 1.08997 * 109.47572 * 302.08928 * 1 2 3 22 22 H 1.09004 * 109.47234 * 62.08768 * 1 2 3 23 23 H 1.08999 * 109.46898 * 182.07916 * 1 2 3 24 24 H 1.08999 * 109.47022 * 183.95278 * 3 2 1 25 25 H 1.08997 * 109.47111 * 303.95671 * 3 2 1 26 26 H 1.09009 * 109.46972 * 63.95402 * 3 2 1 27 27 H 1.00900 * 111.00490 * 357.00091 * 4 2 1 28 28 H 0.97000 * 120.00478 * 180.02562 * 10 9 7 29 29 H 1.07995 * 120.00249 * 359.97438 * 16 15 5 30 30 H 1.08009 * 119.99758 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.99970 * 179.72496 * 18 17 16 32 32 H 1.08005 * 120.00245 * 179.97438 * 19 18 17 33 33 H 1.07996 * 120.00189 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 7 1.9900 -0.7581 1.1259 5 6 2.8373 -1.8670 0.6670 6 1 3.2919 -2.3572 1.5279 7 6 3.9190 -1.3324 -0.2358 8 1 3.9903 -1.6780 -1.2564 9 6 4.8177 -0.4018 0.2413 10 7 5.7614 0.0651 -0.5466 11 14 4.6939 0.1966 2.0065 12 1 5.5130 -0.6777 2.8842 13 1 5.1942 1.5922 2.0924 14 1 3.2763 0.1510 2.4464 15 6 1.9962 -2.8613 -0.0911 16 6 1.9971 -4.1928 0.2804 17 6 1.2260 -5.1050 -0.4154 18 6 0.4533 -4.6856 -1.4821 19 6 0.4513 -3.3539 -1.8527 20 6 1.2231 -2.4418 -1.1576 21 1 -0.3634 0.5459 0.8706 22 1 -0.3634 0.4811 -0.9081 23 1 -0.3633 -1.0270 0.0373 24 1 3.0827 1.3433 -0.0708 25 1 1.5897 1.9164 -0.8524 26 1 1.7043 1.8724 0.9234 27 1 1.2414 -1.0941 1.7132 28 1 6.3939 0.7195 -0.2110 29 1 2.6009 -4.5206 1.1136 30 1 1.2270 -6.1455 -0.1254 31 1 -0.1458 -5.3991 -2.0285 32 1 -0.1522 -3.0262 -2.6864 33 1 1.2219 -1.4015 -1.4474 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214864310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:58 Heat of formation + Delta-G solvation = 82.195273 kcal Electronic energy + Delta-G solvation = -15474.252254 eV Core-core repulsion = 13115.900400 eV Total energy + Delta-G solvation = -2358.351855 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.80855 -36.46553 -33.29422 -31.64528 -30.18983 -29.13358 -27.03028 -25.98206 -22.84652 -21.83124 -21.57892 -19.64610 -16.57070 -16.20626 -15.55619 -14.89588 -14.57893 -14.08115 -14.02719 -13.51091 -12.82477 -12.54768 -12.43874 -12.16053 -11.94054 -11.78493 -11.35012 -11.09841 -10.86643 -10.57483 -10.34260 -10.00850 -9.84673 -9.18313 -8.46046 -8.29088 -8.22816 -7.92034 -6.82523 -5.92791 -3.95487 2.06280 2.11474 3.47112 3.57473 3.83471 4.21903 4.56615 4.68986 5.31480 5.48610 5.52562 5.60308 5.66322 5.76222 5.94386 5.98176 6.15955 6.20071 6.26500 6.38370 6.40092 6.63346 6.73551 6.92566 6.96134 7.09968 7.23010 7.49238 7.63779 7.69807 7.80416 8.03608 8.38566 8.78548 9.10829 9.71141 11.17739 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029891 B = 0.012019 C = 0.010207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.498226 B = 2329.180861 C = 2742.562625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.357 5.357 3 C 0.040 3.960 4 N -0.514 5.514 5 C 0.219 3.781 6 H 0.051 0.949 7 C -0.483 4.483 8 H 0.071 0.929 9 C 0.083 3.917 10 N -0.902 5.902 11 Si 0.853 3.147 12 H -0.297 1.297 13 H -0.302 1.302 14 H -0.200 1.200 15 C -0.069 4.069 16 C -0.127 4.127 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.139 4.139 20 C -0.100 4.100 21 H 0.019 0.981 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.012 0.988 27 H 0.301 0.699 28 H 0.260 0.740 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 -3.224 1.803 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.170 5.170 3 C -0.109 4.109 4 N -0.236 5.236 5 C 0.112 3.888 6 H 0.069 0.931 7 C -0.522 4.522 8 H 0.089 0.911 9 C -0.119 4.119 10 N -0.540 5.540 11 Si 0.681 3.319 12 H -0.225 1.225 13 H -0.230 1.230 14 H -0.122 1.122 15 C -0.071 4.071 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.118 4.118 21 H 0.037 0.963 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.246 -2.880 1.473 10.744 hybrid contribution -0.813 0.053 1.160 1.418 sum -11.059 -2.828 2.633 11.715 Atomic orbital electron populations 1.22944 0.90707 1.01470 1.00331 1.65117 1.03400 1.13396 1.35122 1.22397 1.03141 0.87497 0.97833 1.65319 1.19641 1.27134 1.11535 1.18874 0.90361 0.85131 0.94408 0.93114 1.20569 1.09001 1.24002 0.98586 0.91087 1.24881 0.94177 0.95163 0.97670 1.69950 1.17209 1.30563 1.36295 0.87485 0.81780 0.76855 0.85814 1.22503 1.22962 1.12229 1.20997 0.95415 0.94617 0.96048 1.21135 0.99444 0.93609 1.00435 1.20944 0.98515 0.98681 0.97096 1.20923 1.00926 0.95932 0.98314 1.21176 1.00726 0.93667 1.00119 1.21844 0.94340 1.01559 0.94049 0.96272 0.91448 0.91641 0.89387 0.92688 0.96920 0.88248 0.93034 0.86960 0.87394 0.87577 0.87371 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.07 8.25 60.06 0.50 0.42 16 2 N -0.36 -6.95 2.19 -128.55 -0.28 -7.23 16 3 C 0.04 0.78 9.30 60.07 0.56 1.34 16 4 N -0.51 -10.56 3.26 -6.65 -0.02 -10.59 16 5 C 0.22 4.94 2.26 -70.02 -0.16 4.78 16 6 H 0.05 1.16 7.32 -51.93 -0.38 0.78 16 7 C -0.48 -13.13 8.14 -34.44 -0.28 -13.41 16 8 H 0.07 2.19 7.97 -52.49 -0.42 1.77 16 9 C 0.08 2.34 4.20 -17.82 -0.07 2.26 16 10 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 11 Si 0.85 20.98 25.04 -169.99 -4.26 16.72 16 12 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 14 H -0.20 -4.54 5.17 56.52 0.29 -4.25 16 15 C -0.07 -1.41 4.85 -104.62 -0.51 -1.92 16 16 C -0.13 -2.35 9.67 -39.58 -0.38 -2.74 16 17 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 18 C -0.14 -2.28 10.05 -39.59 -0.40 -2.68 16 19 C -0.14 -2.36 10.05 -39.58 -0.40 -2.76 16 20 C -0.10 -1.94 7.05 -39.58 -0.28 -2.22 16 21 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.00 6.71 -51.93 -0.35 0.66 16 24 H 0.09 2.05 5.11 -51.93 -0.27 1.79 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 27 H 0.30 5.56 8.14 -174.66 -1.42 4.13 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.11 1.92 7.95 -52.49 -0.42 1.50 16 30 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.15 3.12 5.02 -52.49 -0.26 2.86 16 LS Contribution 260.96 15.07 3.93 3.93 Total: -1.00 -29.80 260.96 -7.39 -37.19 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.72 Total: 5.94 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.82 Total: -19.51 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.47 Total: -44.28 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.26 Total: 16.72 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.80 -7.39 -37.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214864310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.386 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds