Wall clock time and date at job start Mon Mar 30 2020 03:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99859 * 2 1 4 4 N 1.45394 * 110.99827 * 123.95332 * 2 1 3 5 5 C 1.46905 * 110.99945 * 120.95994 * 4 2 1 6 6 H 1.08997 * 109.47371 * 174.49933 * 5 4 2 7 7 C 1.50695 * 109.47408 * 54.49480 * 5 4 2 8 8 H 1.07997 * 120.00295 * 240.00629 * 7 5 4 9 9 C 1.37884 * 119.99787 * 60.00217 * 7 5 4 10 10 N 1.31508 * 120.00039 * 180.02562 * 9 7 5 11 11 Si 1.86800 * 119.99899 * 359.97438 * 9 7 5 12 12 H 1.48508 * 109.46779 * 90.00004 * 11 9 7 13 13 H 1.48500 * 109.47190 * 209.99722 * 11 9 7 14 14 H 1.48498 * 109.47171 * 330.00159 * 11 9 7 15 15 C 1.50701 * 109.46613 * 294.49864 * 5 4 2 16 16 C 1.38239 * 119.99745 * 234.26760 * 15 5 4 17 17 C 1.38236 * 119.99823 * 180.02562 * 16 15 5 18 18 C 1.38230 * 120.00088 * 359.95699 * 17 16 15 19 19 C 1.38234 * 120.00094 * 359.97438 * 18 17 16 20 20 C 1.38232 * 120.00050 * 0.07305 * 19 18 17 21 21 H 1.08997 * 109.47572 * 302.08928 * 1 2 3 22 22 H 1.09004 * 109.47234 * 62.08768 * 1 2 3 23 23 H 1.08999 * 109.46898 * 182.07916 * 1 2 3 24 24 H 1.08999 * 109.47022 * 183.95278 * 3 2 1 25 25 H 1.08997 * 109.47111 * 303.95671 * 3 2 1 26 26 H 1.09009 * 109.46972 * 63.95402 * 3 2 1 27 27 H 1.00900 * 111.00490 * 357.00091 * 4 2 1 28 28 H 0.97000 * 120.00478 * 180.02562 * 10 9 7 29 29 H 1.07995 * 120.00249 * 359.97438 * 16 15 5 30 30 H 1.08009 * 119.99758 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.99970 * 179.72496 * 18 17 16 32 32 H 1.08005 * 120.00245 * 179.97438 * 19 18 17 33 33 H 1.07996 * 120.00189 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 7 1.9900 -0.7581 1.1259 5 6 2.8373 -1.8670 0.6670 6 1 3.2919 -2.3572 1.5279 7 6 3.9190 -1.3324 -0.2358 8 1 3.9903 -1.6780 -1.2564 9 6 4.8177 -0.4018 0.2413 10 7 5.7614 0.0651 -0.5466 11 14 4.6939 0.1966 2.0065 12 1 5.5130 -0.6777 2.8842 13 1 5.1942 1.5922 2.0924 14 1 3.2763 0.1510 2.4464 15 6 1.9962 -2.8613 -0.0911 16 6 1.9971 -4.1928 0.2804 17 6 1.2260 -5.1050 -0.4154 18 6 0.4533 -4.6856 -1.4821 19 6 0.4513 -3.3539 -1.8527 20 6 1.2231 -2.4418 -1.1576 21 1 -0.3634 0.5459 0.8706 22 1 -0.3634 0.4811 -0.9081 23 1 -0.3633 -1.0270 0.0373 24 1 3.0827 1.3433 -0.0708 25 1 1.5897 1.9164 -0.8524 26 1 1.7043 1.8724 0.9234 27 1 1.2414 -1.0941 1.7132 28 1 6.3939 0.7195 -0.2110 29 1 2.6009 -4.5206 1.1136 30 1 1.2270 -6.1455 -0.1254 31 1 -0.1458 -5.3991 -2.0285 32 1 -0.1522 -3.0262 -2.6864 33 1 1.2219 -1.4015 -1.4474 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214864310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:58 Heat of formation + Delta-G solvation = 63.496059 kcal Electronic energy + Delta-G solvation = -15475.063113 eV Core-core repulsion = 13115.900400 eV Total energy + Delta-G solvation = -2359.162713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25250 -37.95907 -35.06462 -33.56834 -31.54542 -30.59151 -28.62080 -27.70983 -24.53076 -23.24407 -23.01903 -21.26895 -18.60765 -17.62945 -17.18064 -16.37871 -16.24288 -15.71172 -15.44368 -14.98626 -14.60773 -14.07554 -13.87442 -13.77652 -13.48375 -13.15179 -13.09756 -12.63204 -12.41491 -12.28090 -11.98890 -11.67653 -11.53039 -11.22665 -10.59781 -9.86317 -9.58781 -9.36527 -8.39284 -8.11608 -6.16690 0.68655 0.74712 1.48474 1.54927 1.87397 2.60687 2.71254 3.16697 3.28057 4.15371 4.23562 4.27350 4.35420 4.48300 4.57004 4.64605 4.77037 4.82828 4.89096 4.94767 4.98741 5.10040 5.28990 5.34007 5.48282 5.65266 5.74891 5.83395 6.02917 6.22669 6.29360 6.38823 6.48182 6.84954 7.14037 7.53987 9.02935 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029891 B = 0.012019 C = 0.010207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.498226 B = 2329.180861 C = 2742.562625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.375 5.375 3 C 0.043 3.957 4 N -0.519 5.519 5 C 0.227 3.773 6 H 0.048 0.952 7 C -0.472 4.472 8 H 0.020 0.980 9 C 0.035 3.965 10 N -0.954 5.954 11 Si 0.912 3.088 12 H -0.304 1.304 13 H -0.315 1.315 14 H -0.166 1.166 15 C -0.097 4.097 16 C -0.140 4.140 17 C -0.132 4.132 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.115 4.115 21 H 0.033 0.967 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.318 0.682 28 H 0.257 0.743 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.796 -4.403 2.550 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 N -0.189 5.189 3 C -0.106 4.106 4 N -0.242 5.242 5 C 0.119 3.881 6 H 0.066 0.934 7 C -0.510 4.510 8 H 0.038 0.962 9 C -0.162 4.162 10 N -0.595 5.595 11 Si 0.739 3.261 12 H -0.232 1.232 13 H -0.243 1.243 14 H -0.087 1.087 15 C -0.099 4.099 16 C -0.159 4.159 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.133 4.133 21 H 0.052 0.948 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.136 0.864 28 H 0.066 0.934 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.008 -4.076 2.226 13.812 hybrid contribution -0.054 0.328 0.792 0.859 sum -13.062 -3.748 3.018 13.920 Atomic orbital electron populations 1.22920 0.87858 1.02112 1.01778 1.65031 1.06017 1.13066 1.34820 1.22298 1.00672 0.88165 0.99481 1.64891 1.20699 1.26302 1.12294 1.18543 0.89908 0.86106 0.93524 0.93425 1.20645 1.10288 1.23140 0.96952 0.96168 1.25585 0.93789 0.95405 1.01394 1.70100 1.18864 1.32138 1.38428 0.86623 0.83218 0.75155 0.81081 1.23223 1.24291 1.08716 1.20850 0.96620 0.95186 0.97220 1.21316 1.00189 0.93181 1.01210 1.21318 0.97299 0.99843 0.96518 1.21360 1.00236 0.96021 0.97781 1.21454 1.00219 0.93947 1.00277 1.21763 0.95454 1.01546 0.94553 0.94827 0.89805 0.91386 0.93523 0.90596 0.95610 0.86406 0.93397 0.86265 0.84226 0.84041 0.85021 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.25 127.69 1.05 1.12 16 2 N -0.37 -14.16 2.19 -560.61 -1.23 -15.39 16 3 C 0.04 1.63 9.30 127.69 1.19 2.82 16 4 N -0.52 -20.61 3.26 -174.95 -0.57 -21.18 16 5 C 0.23 10.21 2.26 43.42 0.10 10.31 16 6 H 0.05 2.16 7.32 -2.39 -0.02 2.14 16 7 C -0.47 -26.51 8.14 25.60 0.21 -26.30 16 8 H 0.02 1.31 7.97 -2.91 -0.02 1.28 16 9 C 0.04 2.05 4.20 84.66 0.36 2.40 16 10 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 11 Si 0.91 44.32 25.04 68.60 1.72 46.03 16 12 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 13 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 14 H -0.17 -7.12 5.17 99.48 0.51 -6.61 16 15 C -0.10 -3.90 4.85 -19.86 -0.10 -3.99 16 16 C -0.14 -4.94 9.67 22.27 0.22 -4.72 16 17 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 18 C -0.14 -3.80 10.05 22.27 0.22 -3.58 16 19 C -0.14 -4.41 10.05 22.27 0.22 -4.19 16 20 C -0.11 -4.35 7.05 22.27 0.16 -4.19 16 21 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 23 H 0.07 1.91 6.71 -2.39 -0.02 1.89 16 24 H 0.05 2.19 5.11 -2.39 -0.01 2.18 16 25 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.03 0.89 8.14 -2.38 -0.02 0.88 16 27 H 0.32 10.99 8.14 -204.85 -1.67 9.32 16 28 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.12 3.91 7.95 -2.91 -0.02 3.88 16 30 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.14 5.58 5.02 -2.91 -0.01 5.57 16 Total: -1.00 -66.92 260.96 3.30 -63.62 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.77 Total: 20.89 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.85 Total: -33.97 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -1.50 Total: -96.58 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.72 Total: 46.03 kcal Total: -66.92 3.30 -63.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214864310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.117 kcal (2) G-P(sol) polarization free energy of solvation -66.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds