Wall clock time and date at job start Mon Mar 30 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36096 * 126.10567 * 2 1 4 4 C 1.39095 * 106.36922 * 180.18477 * 3 2 1 5 5 C 1.41218 * 126.44465 * 179.83943 * 4 3 2 6 6 H 1.08005 * 119.99887 * 5.88855 * 5 4 3 7 7 C 1.39711 * 120.00339 * 185.87877 * 5 4 3 8 8 N 1.31014 * 119.99988 * 6.42045 * 7 5 4 9 9 Si 1.86800 * 120.00285 * 186.42406 * 7 5 4 10 10 H 1.48500 * 109.46926 * 265.01533 * 9 7 5 11 11 H 1.48502 * 109.47150 * 25.01182 * 9 7 5 12 12 H 1.48499 * 109.47436 * 145.01353 * 9 7 5 13 13 N 1.35974 * 107.11630 * 359.58217 * 4 3 2 14 14 C 1.30151 * 109.13579 * 0.26109 * 13 4 3 15 15 C 1.50696 * 125.20665 * 179.97438 * 14 13 4 16 16 C 1.54268 * 110.03227 * 57.93105 * 15 14 13 17 17 C 1.54962 * 104.16175 * 217.13784 * 16 15 14 18 18 C 1.54889 * 102.77817 * 37.88774 * 17 16 15 19 19 C 1.53875 * 110.03179 * 300.71335 * 15 14 13 20 20 H 1.09000 * 109.47160 * 270.27501 * 1 2 3 21 21 H 1.09002 * 109.46795 * 30.27037 * 1 2 3 22 22 H 1.08997 * 109.47000 * 150.27449 * 1 2 3 23 23 H 1.07995 * 126.82411 * 0.03136 * 3 2 1 24 24 H 0.97003 * 120.00422 * 179.97438 * 8 7 5 25 25 H 1.09005 * 110.01923 * 179.32459 * 15 14 13 26 26 H 1.08995 * 110.48404 * 335.78487 * 16 15 14 27 27 H 1.09001 * 110.48107 * 98.42821 * 16 15 14 28 28 H 1.09003 * 110.71912 * 279.57671 * 17 16 15 29 29 H 1.08999 * 110.76375 * 156.22215 * 17 16 15 30 30 H 1.08997 * 110.49067 * 203.40603 * 18 17 16 31 31 H 1.09001 * 110.60218 * 80.81674 * 18 17 16 32 32 H 1.09000 * 110.03519 * 238.56562 * 19 15 14 33 33 H 1.09001 * 110.03604 * 359.95375 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2671 1.0996 0.0000 4 6 3.5763 0.6299 -0.0043 5 6 4.7495 1.4158 -0.0091 6 1 4.6807 2.4895 0.0864 7 6 5.9993 0.8047 -0.1370 8 7 6.0784 -0.4806 -0.3784 9 14 7.5577 1.8200 0.0363 10 1 8.0229 2.2461 -1.3081 11 1 7.2775 3.0193 0.8661 12 1 8.6116 1.0020 0.6885 13 7 3.5142 -0.7285 0.0028 14 6 2.2664 -1.0985 0.0053 15 6 1.7835 -2.5259 0.0124 16 6 2.3439 -3.2673 1.2438 17 6 2.6423 -4.6959 0.7229 18 6 3.1781 -4.4343 -0.7067 19 6 2.3132 -3.2677 -1.2273 20 1 -0.3633 0.0049 1.0276 21 1 -0.3633 0.8876 -0.5180 22 1 -0.3633 -0.8924 -0.5096 23 1 1.9500 2.1319 0.0005 24 1 6.9462 -0.9049 -0.4675 25 1 0.6938 -2.5512 0.0253 26 1 3.2594 -2.7896 1.5925 27 1 1.6011 -3.2984 2.0409 28 1 1.7308 -5.2928 0.6905 29 1 3.4011 -5.1805 1.3371 30 1 3.0441 -5.3171 -1.3318 31 1 4.2288 -4.1459 -0.6756 32 1 1.4807 -3.6537 -1.8156 33 1 2.9189 -2.5950 -1.8346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219307131.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:41 Heat of formation + Delta-G solvation = 40.277912 kcal Electronic energy + Delta-G solvation = -15094.812499 eV Core-core repulsion = 12734.642971 eV Total energy + Delta-G solvation = -2360.169528 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08572 -37.14315 -33.52733 -31.89249 -29.77876 -28.13262 -27.17691 -26.13132 -23.92448 -20.58148 -20.13649 -19.44593 -17.91525 -16.88461 -15.36749 -14.97344 -14.54375 -14.34618 -14.07222 -13.26199 -12.77524 -12.38324 -12.16925 -11.94055 -11.90482 -11.07667 -10.83527 -10.70172 -10.66668 -10.59062 -10.54761 -10.29547 -10.09695 -9.92687 -9.76009 -9.01503 -7.91205 -7.80081 -6.78963 -6.12676 -3.88361 3.19006 3.30800 3.35198 3.59423 4.18812 4.32464 4.67079 5.10539 5.23010 5.26162 5.44148 5.72767 5.77216 5.80270 5.90225 5.93490 5.99391 6.11031 6.16289 6.18309 6.38004 6.40277 6.52027 6.62372 6.80312 6.95465 7.03224 7.39531 7.61617 7.90883 8.04466 8.54951 8.88192 9.23795 9.43646 10.15646 10.82443 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.010096 C = 0.007861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.194643 B = 2772.679162 C = 3561.040079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.473 5.473 3 C -0.233 4.233 4 C 0.197 3.803 5 C -0.457 4.457 6 H 0.072 0.928 7 C 0.078 3.922 8 N -0.774 5.774 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.267 1.267 12 H -0.281 1.281 13 N -0.446 5.446 14 C 0.168 3.832 15 C 0.005 3.995 16 C -0.110 4.110 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.108 4.108 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.139 0.861 24 H 0.264 0.736 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.760 -5.827 0.485 9.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.165 5.165 3 C -0.359 4.359 4 C 0.074 3.926 5 C -0.492 4.492 6 H 0.090 0.910 7 C -0.139 4.139 8 N -0.400 5.400 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.191 1.191 12 H -0.207 1.207 13 N -0.169 5.169 14 C -0.092 4.092 15 C -0.015 4.015 16 C -0.148 4.148 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.146 4.146 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.156 0.844 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.069 -6.483 0.443 9.602 hybrid contribution -0.123 1.249 0.055 1.256 sum -7.193 -5.234 0.497 8.909 Atomic orbital electron populations 1.21562 0.80795 1.02211 1.01098 1.44575 1.04559 1.07075 1.60311 1.22322 0.91246 0.89833 1.32465 1.18435 0.90589 0.88026 0.95590 1.18411 0.88858 0.93341 1.48631 0.90966 1.25707 0.99800 0.94791 0.93643 1.70082 1.24655 1.09782 1.35484 0.86523 0.82039 0.80572 0.78646 1.20217 1.19122 1.20676 1.71060 1.13276 1.12673 1.19870 1.23220 0.87540 0.88821 1.09615 1.19906 0.97639 0.88011 0.95975 1.22401 1.01733 0.94662 0.96035 1.22464 0.99872 0.96742 0.96829 1.22284 1.00833 0.96990 0.95425 1.22098 0.98667 0.97050 0.96823 0.92991 0.91545 0.91568 0.84371 0.92536 0.91844 0.89698 0.92808 0.92423 0.92003 0.92771 0.90721 0.93069 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.42 10.79 59.85 0.65 2.06 16 2 N -0.47 -10.68 3.15 -120.04 -0.38 -11.05 16 3 C -0.23 -5.99 11.63 -15.34 -0.18 -6.17 16 4 C 0.20 5.76 6.66 -84.58 -0.56 5.20 16 5 C -0.46 -13.43 9.37 -37.90 -0.36 -13.78 16 6 H 0.07 2.02 7.85 -52.48 -0.41 1.61 16 7 C 0.08 2.21 5.48 -17.35 -0.10 2.11 16 8 N -0.77 -22.53 12.01 55.54 0.67 -21.86 16 9 Si 0.90 20.67 29.56 -169.99 -5.03 15.65 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.45 -12.56 9.29 -8.18 -0.08 -12.63 16 14 C 0.17 3.99 6.12 -154.86 -0.95 3.04 16 15 C 0.01 0.10 3.26 -90.65 -0.30 -0.20 16 16 C -0.11 -1.93 6.36 -25.03 -0.16 -2.09 16 17 C -0.12 -1.79 6.91 -24.70 -0.17 -1.96 16 18 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 19 C -0.11 -1.91 6.45 -25.61 -0.17 -2.08 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.07 0.92 7.03 -51.93 -0.36 0.56 16 23 H 0.14 3.26 8.06 -52.49 -0.42 2.84 16 24 H 0.26 7.10 8.30 -40.82 -0.34 6.76 16 25 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 26 H 0.08 1.80 7.64 -51.93 -0.40 1.40 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.64 7.64 -51.93 -0.40 1.24 16 LS Contribution 273.56 15.07 4.12 4.12 Total: -1.00 -32.47 273.56 -8.00 -40.48 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.86 Total: 1.23 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -2.46 Total: -15.92 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.21 Total: -45.55 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.47 -8.00 -40.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219307131.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.755 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds