Wall clock time and date at job start Mon Mar 30 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36096 * 126.10567 * 2 1 4 4 C 1.39095 * 106.36922 * 180.18477 * 3 2 1 5 5 C 1.41218 * 126.44465 * 179.83943 * 4 3 2 6 6 H 1.08005 * 119.99887 * 5.88855 * 5 4 3 7 7 C 1.39711 * 120.00339 * 185.87877 * 5 4 3 8 8 N 1.31014 * 119.99988 * 6.42045 * 7 5 4 9 9 Si 1.86800 * 120.00285 * 186.42406 * 7 5 4 10 10 H 1.48500 * 109.46926 * 265.01533 * 9 7 5 11 11 H 1.48502 * 109.47150 * 25.01182 * 9 7 5 12 12 H 1.48499 * 109.47436 * 145.01353 * 9 7 5 13 13 N 1.35974 * 107.11630 * 359.58217 * 4 3 2 14 14 C 1.30151 * 109.13579 * 0.26109 * 13 4 3 15 15 C 1.50696 * 125.20665 * 179.97438 * 14 13 4 16 16 C 1.54268 * 110.03227 * 57.93105 * 15 14 13 17 17 C 1.54962 * 104.16175 * 217.13784 * 16 15 14 18 18 C 1.54889 * 102.77817 * 37.88774 * 17 16 15 19 19 C 1.53875 * 110.03179 * 300.71335 * 15 14 13 20 20 H 1.09000 * 109.47160 * 270.27501 * 1 2 3 21 21 H 1.09002 * 109.46795 * 30.27037 * 1 2 3 22 22 H 1.08997 * 109.47000 * 150.27449 * 1 2 3 23 23 H 1.07995 * 126.82411 * 0.03136 * 3 2 1 24 24 H 0.97003 * 120.00422 * 179.97438 * 8 7 5 25 25 H 1.09005 * 110.01923 * 179.32459 * 15 14 13 26 26 H 1.08995 * 110.48404 * 335.78487 * 16 15 14 27 27 H 1.09001 * 110.48107 * 98.42821 * 16 15 14 28 28 H 1.09003 * 110.71912 * 279.57671 * 17 16 15 29 29 H 1.08999 * 110.76375 * 156.22215 * 17 16 15 30 30 H 1.08997 * 110.49067 * 203.40603 * 18 17 16 31 31 H 1.09001 * 110.60218 * 80.81674 * 18 17 16 32 32 H 1.09000 * 110.03519 * 238.56562 * 19 15 14 33 33 H 1.09001 * 110.03604 * 359.95375 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2671 1.0996 0.0000 4 6 3.5763 0.6299 -0.0043 5 6 4.7495 1.4158 -0.0091 6 1 4.6807 2.4895 0.0864 7 6 5.9993 0.8047 -0.1370 8 7 6.0784 -0.4806 -0.3784 9 14 7.5577 1.8200 0.0363 10 1 8.0229 2.2461 -1.3081 11 1 7.2775 3.0193 0.8661 12 1 8.6116 1.0020 0.6885 13 7 3.5142 -0.7285 0.0028 14 6 2.2664 -1.0985 0.0053 15 6 1.7835 -2.5259 0.0124 16 6 2.3439 -3.2673 1.2438 17 6 2.6423 -4.6959 0.7229 18 6 3.1781 -4.4343 -0.7067 19 6 2.3132 -3.2677 -1.2273 20 1 -0.3633 0.0049 1.0276 21 1 -0.3633 0.8876 -0.5180 22 1 -0.3633 -0.8924 -0.5096 23 1 1.9500 2.1319 0.0005 24 1 6.9462 -0.9049 -0.4675 25 1 0.6938 -2.5512 0.0253 26 1 3.2594 -2.7896 1.5925 27 1 1.6011 -3.2984 2.0409 28 1 1.7308 -5.2928 0.6905 29 1 3.4011 -5.1805 1.3371 30 1 3.0441 -5.3171 -1.3318 31 1 4.2288 -4.1459 -0.6756 32 1 1.4807 -3.6537 -1.8156 33 1 2.9189 -2.5950 -1.8346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219307131.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:40 Heat of formation + Delta-G solvation = 20.528107 kcal Electronic energy + Delta-G solvation = -15095.668914 eV Core-core repulsion = 12734.642971 eV Total energy + Delta-G solvation = -2361.025944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.92834 -38.55187 -35.49284 -33.75779 -31.42792 -29.48636 -29.03749 -27.75041 -25.77176 -22.26115 -21.48225 -21.28891 -19.61636 -18.77918 -17.16423 -16.41413 -16.37137 -15.94421 -15.61927 -14.85463 -14.23005 -14.14447 -14.01215 -13.47660 -13.27318 -12.87839 -12.69324 -12.34718 -12.19093 -12.09674 -11.89405 -11.82325 -11.78465 -11.42421 -11.31659 -11.01967 -9.88118 -9.71244 -8.80683 -8.19775 -6.03270 1.34566 1.40292 1.54705 1.74055 2.34268 2.57772 2.67856 3.68634 3.70644 3.88767 3.96163 4.19908 4.35538 4.47950 4.54368 4.62699 4.67180 4.74901 4.75296 4.81178 4.91138 5.06865 5.15210 5.27541 5.34040 5.40535 5.50589 5.62427 5.65712 5.96020 6.05810 6.45348 6.98666 7.17777 7.37272 8.20529 8.76849 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.010096 C = 0.007861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.194643 B = 2772.679162 C = 3561.040079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.474 5.474 3 C -0.234 4.234 4 C 0.144 3.856 5 C -0.498 4.498 6 H 0.071 0.929 7 C 0.027 3.973 8 N -0.814 5.814 9 Si 0.977 3.023 10 H -0.267 1.267 11 H -0.261 1.261 12 H -0.274 1.274 13 N -0.494 5.494 14 C 0.169 3.831 15 C 0.003 3.997 16 C -0.110 4.110 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.105 4.105 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.095 0.905 23 H 0.154 0.846 24 H 0.267 0.733 25 H 0.102 0.898 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.089 0.911 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 -6.983 0.661 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.163 5.163 3 C -0.361 4.361 4 C 0.020 3.980 5 C -0.533 4.533 6 H 0.089 0.911 7 C -0.187 4.187 8 N -0.441 5.441 9 Si 0.799 3.201 10 H -0.192 1.192 11 H -0.185 1.185 12 H -0.199 1.199 13 N -0.217 5.217 14 C -0.093 4.093 15 C -0.017 4.017 16 C -0.149 4.149 17 C -0.146 4.146 18 C -0.155 4.155 19 C -0.144 4.144 20 H 0.092 0.908 21 H 0.101 0.899 22 H 0.114 0.886 23 H 0.171 0.829 24 H 0.076 0.924 25 H 0.120 0.880 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.129 -7.633 0.619 11.916 hybrid contribution 0.321 1.596 -0.009 1.628 sum -8.808 -6.037 0.610 10.696 Atomic orbital electron populations 1.21994 0.76557 1.04607 1.03245 1.44875 1.07160 1.05636 1.58676 1.22543 0.91033 0.91368 1.31153 1.18954 0.92153 0.89180 0.97753 1.18768 0.90423 0.93567 1.50538 0.91120 1.26619 1.03160 0.96050 0.92838 1.70230 1.25542 1.11647 1.36713 0.85294 0.77111 0.78722 0.78962 1.19200 1.18468 1.19869 1.70948 1.16418 1.12520 1.21851 1.24110 0.86892 0.91156 1.07139 1.20221 0.99764 0.84898 0.96826 1.22355 1.00095 0.96003 0.96400 1.22446 1.01657 0.95244 0.95225 1.22266 0.98335 0.97559 0.97326 1.22073 0.99419 0.96588 0.96284 0.90812 0.89874 0.88615 0.82897 0.92356 0.87968 0.94686 0.90271 0.88536 0.91474 0.89512 0.94643 0.89260 0.95346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.79 127.77 1.38 3.62 16 2 N -0.47 -20.94 3.15 -533.71 -1.68 -22.62 16 3 C -0.23 -12.22 11.63 84.24 0.98 -11.24 16 4 C 0.14 8.80 6.66 39.44 0.26 9.06 16 5 C -0.50 -30.70 9.37 23.36 0.22 -30.48 16 6 H 0.07 4.15 7.85 -2.91 -0.02 4.13 16 7 C 0.03 1.59 5.48 85.17 0.47 2.06 16 8 N -0.81 -49.95 12.01 21.79 0.26 -49.69 16 9 Si 0.98 44.08 29.56 68.60 2.03 46.11 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.49 -29.14 9.29 -179.79 -1.67 -30.81 16 14 C 0.17 8.04 6.12 137.93 0.84 8.89 16 15 C 0.00 0.11 3.26 -10.82 -0.04 0.07 16 16 C -0.11 -3.69 6.36 31.70 0.20 -3.49 16 17 C -0.11 -2.88 6.91 31.91 0.22 -2.66 16 18 C -0.12 -3.61 6.83 31.67 0.22 -3.40 16 19 C -0.11 -3.58 6.45 31.32 0.20 -3.38 16 20 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.10 2.20 7.03 -2.39 -0.02 2.19 16 23 H 0.15 7.28 8.06 -2.91 -0.02 7.26 16 24 H 0.27 15.08 8.30 -92.71 -0.77 14.31 16 25 H 0.10 2.81 6.72 -2.38 -0.02 2.79 16 26 H 0.03 1.52 7.64 -2.39 -0.02 1.50 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.03 1.23 7.64 -2.39 -0.02 1.21 16 Total: -1.00 -76.69 273.56 4.98 -71.72 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 1.08 Total: 16.23 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 4.96 Total: -30.94 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -3.09 Total: -103.12 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -76.69 4.98 -71.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219307131.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.245 kcal (2) G-P(sol) polarization free energy of solvation -76.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds