Wall clock time and date at job start Mon Mar 30 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47156 * 2 1 4 4 C 1.46509 * 119.99625 * 270.00228 * 3 2 1 5 5 C 1.50698 * 109.47007 * 269.99290 * 4 3 2 6 6 H 1.07998 * 120.00214 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99742 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00162 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00179 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47439 * 89.99894 * 9 7 5 11 11 H 1.48499 * 109.47081 * 209.99998 * 9 7 5 12 12 H 1.48496 * 109.47075 * 329.99511 * 9 7 5 13 13 C 1.39162 * 120.00287 * 89.99858 * 3 2 1 14 14 C 1.39501 * 120.86743 * 180.02562 * 13 3 2 15 15 C 1.37869 * 119.06720 * 179.97438 * 14 13 3 16 16 N 1.32014 * 120.84545 * 359.97438 * 15 14 13 17 17 C 1.31977 * 121.91076 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.57991 * 179.97438 * 17 16 15 19 19 C 1.37916 * 120.84035 * 359.97438 * 17 16 15 20 20 H 1.08998 * 109.47320 * 60.00563 * 1 2 3 21 21 H 1.09005 * 109.46784 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47178 * 299.99558 * 1 2 3 23 23 H 1.09004 * 109.47614 * 240.00282 * 2 1 3 24 24 H 1.09001 * 109.47623 * 120.00135 * 2 1 3 25 25 H 1.08998 * 109.47144 * 29.99847 * 4 3 2 26 26 H 1.09003 * 109.46462 * 149.99614 * 4 3 2 27 27 H 0.96997 * 120.00246 * 179.97438 * 8 7 5 28 28 H 1.07994 * 120.46656 * 0.02562 * 14 13 3 29 29 H 1.07999 * 119.57776 * 180.02562 * 15 14 13 30 30 H 1.08994 * 109.46968 * 89.99701 * 18 17 16 31 31 H 1.09004 * 109.46683 * 209.99704 * 18 17 16 32 32 H 1.08998 * 109.46751 * 329.99373 * 18 17 16 33 33 H 1.08000 * 120.46751 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2689 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1492 2.3905 -2.8775 8 7 5.3912 2.1836 -3.2575 9 14 3.0132 3.4370 -3.9281 10 1 3.1168 4.8570 -3.5060 11 1 3.4063 3.3149 -5.3549 12 1 1.6134 2.9711 -3.7588 13 6 2.2502 2.0373 1.2051 14 6 2.7147 3.3526 1.2262 15 6 2.9314 3.9670 2.4412 16 7 2.7045 3.3271 3.5734 17 6 2.2651 2.0828 3.5954 18 6 2.0244 1.4022 4.9183 19 6 2.0234 1.3974 2.4233 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.5816 1.6876 -2.0284 26 1 2.0954 3.1410 -1.1385 27 1 5.7172 2.5740 -4.0834 28 1 2.9011 3.8823 0.3037 29 1 3.2905 4.9852 2.4671 30 1 0.9974 1.5804 5.2370 31 1 2.1908 0.3303 4.8110 32 1 2.7110 1.8037 5.6636 33 1 1.6634 0.3795 2.4484 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229530947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:06 Heat of formation + Delta-G solvation = 32.099451 kcal Electronic energy + Delta-G solvation = -14810.459593 eV Core-core repulsion = 12449.935421 eV Total energy + Delta-G solvation = -2360.524172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.70088 -36.79498 -32.88821 -32.40616 -31.24119 -30.05122 -27.40195 -26.65220 -23.53770 -22.52564 -21.64972 -19.47494 -16.99771 -16.77215 -16.05350 -14.90743 -14.48689 -14.28998 -13.98521 -13.82489 -13.15157 -12.95185 -12.72239 -12.45759 -12.12213 -11.97871 -11.86110 -11.61154 -11.20634 -10.86782 -10.67538 -10.44992 -10.31441 -9.81377 -9.41659 -8.84190 -8.72303 -8.36652 -6.83308 -6.20817 -4.21783 1.79813 2.23301 3.17064 3.24617 3.25681 3.81730 4.26437 4.47836 4.87070 5.08877 5.21983 5.31249 5.57904 5.59281 5.67913 5.78397 5.82490 5.86311 6.00097 6.05230 6.13580 6.21334 6.34961 6.42680 6.52293 6.62462 6.76210 6.83271 7.30362 7.45233 7.88786 8.14898 8.41701 8.72149 8.85802 9.38286 10.92183 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030680 B = 0.008736 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.441664 B = 3204.401911 C = 3679.510735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.593 5.593 4 C 0.219 3.781 5 C -0.538 4.538 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.892 5.892 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.272 3.728 14 C -0.244 4.244 15 C 0.130 3.870 16 N -0.545 5.545 17 C 0.152 3.848 18 C -0.097 4.097 19 C -0.267 4.267 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.030 0.970 26 H 0.028 0.972 27 H 0.266 0.734 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.022 -1.866 8.523 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.298 5.298 4 C 0.098 3.902 5 C -0.576 4.576 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.530 5.530 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.190 1.190 13 C 0.157 3.843 14 C -0.269 4.269 15 C -0.024 4.024 16 N -0.260 5.260 17 C 0.015 3.985 18 C -0.154 4.154 19 C -0.293 4.293 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.769 -1.509 8.918 12.598 hybrid contribution -0.487 0.122 -1.718 1.789 sum -9.256 -1.387 7.200 11.809 Atomic orbital electron populations 1.22223 0.97044 1.01339 1.02161 1.21332 0.93137 0.83426 1.02703 1.46806 1.66680 1.12496 1.03813 1.19711 0.97364 0.92562 0.80517 1.21430 0.95343 1.33404 1.07465 0.90537 1.24888 0.94936 0.95873 0.97195 1.69895 1.15119 1.44534 1.23478 0.86913 0.81536 0.81407 0.80266 1.19822 1.20854 1.19039 1.18083 0.88758 0.91173 0.86270 1.21744 1.09496 0.95435 1.00220 1.22275 0.94086 0.98829 0.87237 1.67453 1.18504 1.09572 1.30474 1.20776 0.93099 0.90288 0.94322 1.20609 1.02103 0.99234 0.93494 1.21284 1.14516 1.01876 0.91618 0.92538 0.92206 0.92771 0.90154 0.91468 0.95164 0.95411 0.92396 0.84587 0.83710 0.91174 0.91415 0.91036 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.12 1.95 5.91 -4.04 -0.02 1.93 16 3 N -0.59 -11.99 2.58 -172.92 -0.45 -12.44 16 4 C 0.22 5.02 4.01 -5.19 -0.02 5.00 16 5 C -0.54 -14.67 9.94 -34.44 -0.34 -15.01 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 9 Si 0.87 20.36 27.47 -169.99 -4.67 15.69 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 13 C 0.27 5.41 6.58 -83.61 -0.55 4.86 16 14 C -0.24 -4.86 9.27 -39.25 -0.36 -5.22 16 15 C 0.13 2.36 11.17 -17.61 -0.20 2.17 16 16 N -0.55 -10.02 10.27 -9.57 -0.10 -10.12 16 17 C 0.15 2.58 6.78 -82.65 -0.56 2.02 16 18 C -0.10 -1.22 10.17 36.01 0.37 -0.85 16 19 C -0.27 -4.66 8.89 -39.25 -0.35 -5.01 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 24 H 0.07 1.02 6.26 -51.93 -0.33 0.69 16 25 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 26 H 0.03 0.64 5.68 -51.93 -0.30 0.34 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.14 2.82 6.28 -52.49 -0.33 2.49 16 29 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.12 1.87 6.28 -52.49 -0.33 1.54 16 LS Contribution 276.35 15.07 4.16 4.16 Total: -1.00 -30.34 276.35 -6.65 -36.99 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.61 Total: 1.62 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.76 Total: -10.10 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.23 Total: -48.36 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.34 -6.65 -36.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229530947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.087 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds