Wall clock time and date at job start Mon Mar 30 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47156 * 2 1 4 4 C 1.46509 * 119.99625 * 270.00228 * 3 2 1 5 5 C 1.50698 * 109.47007 * 269.99290 * 4 3 2 6 6 H 1.07998 * 120.00214 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99742 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00162 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00179 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47439 * 89.99894 * 9 7 5 11 11 H 1.48499 * 109.47081 * 209.99998 * 9 7 5 12 12 H 1.48496 * 109.47075 * 329.99511 * 9 7 5 13 13 C 1.39162 * 120.00287 * 89.99858 * 3 2 1 14 14 C 1.39501 * 120.86743 * 180.02562 * 13 3 2 15 15 C 1.37869 * 119.06720 * 179.97438 * 14 13 3 16 16 N 1.32014 * 120.84545 * 359.97438 * 15 14 13 17 17 C 1.31977 * 121.91076 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.57991 * 179.97438 * 17 16 15 19 19 C 1.37916 * 120.84035 * 359.97438 * 17 16 15 20 20 H 1.08998 * 109.47320 * 60.00563 * 1 2 3 21 21 H 1.09005 * 109.46784 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47178 * 299.99558 * 1 2 3 23 23 H 1.09004 * 109.47614 * 240.00282 * 2 1 3 24 24 H 1.09001 * 109.47623 * 120.00135 * 2 1 3 25 25 H 1.08998 * 109.47144 * 29.99847 * 4 3 2 26 26 H 1.09003 * 109.46462 * 149.99614 * 4 3 2 27 27 H 0.96997 * 120.00246 * 179.97438 * 8 7 5 28 28 H 1.07994 * 120.46656 * 0.02562 * 14 13 3 29 29 H 1.07999 * 119.57776 * 180.02562 * 15 14 13 30 30 H 1.08994 * 109.46968 * 89.99701 * 18 17 16 31 31 H 1.09004 * 109.46683 * 209.99704 * 18 17 16 32 32 H 1.08998 * 109.46751 * 329.99373 * 18 17 16 33 33 H 1.08000 * 120.46751 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2689 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1492 2.3905 -2.8775 8 7 5.3912 2.1836 -3.2575 9 14 3.0132 3.4370 -3.9281 10 1 3.1168 4.8570 -3.5060 11 1 3.4063 3.3149 -5.3549 12 1 1.6134 2.9711 -3.7588 13 6 2.2502 2.0373 1.2051 14 6 2.7147 3.3526 1.2262 15 6 2.9314 3.9670 2.4412 16 7 2.7045 3.3271 3.5734 17 6 2.2651 2.0828 3.5954 18 6 2.0244 1.4022 4.9183 19 6 2.0234 1.3974 2.4233 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.5816 1.6876 -2.0284 26 1 2.0954 3.1410 -1.1385 27 1 5.7172 2.5740 -4.0834 28 1 2.9011 3.8823 0.3037 29 1 3.2905 4.9852 2.4671 30 1 0.9974 1.5804 5.2370 31 1 2.1908 0.3303 4.8110 32 1 2.7110 1.8037 5.6636 33 1 1.6634 0.3795 2.4484 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229530947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:06 Heat of formation + Delta-G solvation = 13.411570 kcal Electronic energy + Delta-G solvation = -14811.269961 eV Core-core repulsion = 12449.935421 eV Total energy + Delta-G solvation = -2361.334540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11701 -38.28064 -34.90930 -33.73421 -32.55468 -31.75141 -28.86037 -28.10983 -24.94119 -24.29203 -22.99880 -20.96752 -19.09918 -18.23955 -17.52896 -16.46538 -16.17947 -15.76405 -15.37156 -15.16326 -14.63720 -14.48374 -14.14246 -14.09521 -13.50624 -13.17647 -13.10077 -12.94103 -12.79310 -12.46340 -12.15319 -12.11739 -11.81657 -11.68627 -11.17962 -10.84787 -10.26165 -9.73667 -8.39864 -8.33384 -6.42554 0.40161 0.77385 1.33728 1.34078 1.44437 2.28221 2.32932 2.97861 3.07656 3.63318 3.91081 4.03821 4.30083 4.36731 4.45887 4.49578 4.60846 4.68876 4.75874 4.86019 4.89827 4.93094 4.95206 5.01995 5.16673 5.27507 5.35600 5.38127 5.42421 5.91143 6.06024 6.49487 6.63216 6.66860 7.22830 7.32348 8.81188 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030680 B = 0.008736 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.441664 B = 3204.401911 C = 3679.510735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 N -0.605 5.605 4 C 0.230 3.770 5 C -0.540 4.540 6 H 0.025 0.975 7 C 0.015 3.985 8 N -0.944 5.944 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.242 1.242 13 C 0.251 3.749 14 C -0.272 4.272 15 C 0.131 3.869 16 N -0.557 5.557 17 C 0.147 3.853 18 C -0.094 4.094 19 C -0.266 4.266 20 H 0.047 0.953 21 H 0.089 0.911 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.269 0.731 28 H 0.119 0.881 29 H 0.168 0.832 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 -1.997 9.529 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.011 4.011 3 N -0.311 5.311 4 C 0.108 3.892 5 C -0.578 4.578 6 H 0.043 0.957 7 C -0.184 4.184 8 N -0.584 5.584 9 Si 0.768 3.232 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.166 1.166 13 C 0.137 3.863 14 C -0.297 4.297 15 C -0.024 4.024 16 N -0.272 5.272 17 C 0.011 3.989 18 C -0.151 4.151 19 C -0.291 4.291 20 H 0.066 0.934 21 H 0.108 0.892 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.137 0.863 29 H 0.185 0.815 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.016 -1.663 9.964 14.947 hybrid contribution 0.289 0.100 -1.900 1.924 sum -10.727 -1.564 8.064 13.511 Atomic orbital electron populations 1.22113 0.94379 1.03183 1.01819 1.21550 0.95227 0.81614 1.02730 1.46818 1.67525 1.13721 1.03004 1.19398 0.94435 0.93161 0.82197 1.21613 0.97035 1.32279 1.06897 0.95662 1.25851 0.96543 0.97287 0.98709 1.70060 1.17563 1.46393 1.24410 0.85750 0.80171 0.79459 0.77854 1.18957 1.20575 1.16550 1.18409 0.89389 0.91499 0.87024 1.21779 1.11462 0.96158 1.00309 1.22625 0.93245 0.99812 0.86689 1.67583 1.18960 1.10471 1.30227 1.21538 0.91401 0.89862 0.96128 1.20721 1.03385 1.00020 0.90959 1.21547 1.13995 1.02853 0.90741 0.93403 0.89219 0.92513 0.91570 0.90058 0.94219 0.95091 0.92232 0.86317 0.81459 0.89141 0.89297 0.90672 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.17 16 2 C 0.11 3.57 5.91 86.38 0.51 4.08 16 3 N -0.60 -24.34 2.58 -700.98 -1.81 -26.14 16 4 C 0.23 10.56 4.01 85.63 0.34 10.90 16 5 C -0.54 -30.41 9.94 25.60 0.25 -30.15 16 6 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 7 C 0.01 0.82 5.47 84.65 0.46 1.29 16 8 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 9 Si 0.95 42.02 27.47 68.60 1.88 43.91 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 13 C 0.25 9.88 6.58 38.58 0.25 10.13 16 14 C -0.27 -10.93 9.27 22.49 0.21 -10.72 16 15 C 0.13 4.68 11.17 84.58 0.94 5.63 16 16 N -0.56 -19.65 10.27 -184.20 -1.89 -21.54 16 17 C 0.15 4.66 6.78 42.46 0.29 4.95 16 18 C -0.09 -2.02 10.17 71.24 0.72 -1.30 16 19 C -0.27 -8.80 8.89 22.49 0.20 -8.60 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 21 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 24 H 0.08 2.33 6.26 -2.39 -0.01 2.31 16 25 H 0.04 1.75 7.13 -2.39 -0.02 1.73 16 26 H 0.03 1.41 5.68 -2.39 -0.01 1.40 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.12 5.09 6.28 -2.91 -0.02 5.07 16 29 H 0.17 4.98 8.06 -2.91 -0.02 4.95 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.56 8.08 -2.38 -0.02 1.54 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.15 4.03 6.28 -2.91 -0.02 4.01 16 Total: -1.00 -67.42 276.35 4.44 -62.98 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.03 Total: 15.63 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 4.93 Total: -16.97 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -3.40 Total: -105.55 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.91 kcal Total: -67.42 4.44 -62.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229530947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.387 kcal (2) G-P(sol) polarization free energy of solvation -67.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds