Wall clock time and date at job start Mon Mar 30 2020 02:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46996 * 2 1 4 4 C 1.52994 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47208 * 54.99530 * 4 3 2 6 6 N 1.46905 * 109.47188 * 294.99825 * 4 3 2 7 7 C 1.50702 * 109.47019 * 175.00239 * 4 3 2 8 8 C 1.38616 * 119.34640 * 125.02456 * 7 4 3 9 9 C 1.38007 * 119.42752 * 179.97438 * 8 7 4 10 10 C 1.41107 * 118.19677 * 359.72892 * 9 8 7 11 11 C 1.41411 * 120.66394 * 180.26408 * 10 9 8 12 12 H 1.08000 * 120.00219 * 203.59010 * 11 10 9 13 13 C 1.39957 * 119.99835 * 23.59141 * 11 10 9 14 14 N 1.30819 * 120.00011 * 17.34761 * 13 11 10 15 15 Si 1.86799 * 119.99858 * 197.34779 * 13 11 10 16 16 H 1.48501 * 109.47201 * 89.99878 * 15 13 11 17 17 H 1.48500 * 109.47060 * 209.99812 * 15 13 11 18 18 H 1.48500 * 109.47026 * 329.99657 * 15 13 11 19 19 C 1.40712 * 118.67515 * 0.50354 * 10 9 8 20 20 N 1.31498 * 120.40195 * 359.48821 * 19 10 9 21 21 H 1.08997 * 109.47330 * 299.99974 * 1 2 3 22 22 H 1.09001 * 109.46707 * 60.00555 * 1 2 3 23 23 H 1.09006 * 109.46653 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47574 * 239.99535 * 2 1 3 25 25 H 1.09001 * 109.46707 * 119.99445 * 2 1 3 26 26 H 1.09005 * 109.46842 * 59.99662 * 3 2 1 27 27 H 1.08999 * 109.46911 * 299.99850 * 3 2 1 28 28 H 1.00902 * 110.99801 * 176.04784 * 6 4 3 29 29 H 1.00896 * 110.99776 * 300.00151 * 6 4 3 30 30 H 1.08003 * 120.28716 * 0.02562 * 8 7 4 31 31 H 1.08003 * 120.90401 * 179.97438 * 9 8 7 32 32 H 0.97001 * 119.99683 * 180.02562 * 14 13 11 33 33 H 1.07998 * 119.80037 * 179.75533 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 7 4.0591 0.8575 1.2562 7 6 4.0723 2.8580 -0.1231 8 6 4.9521 3.3522 0.8272 9 6 5.4136 4.6479 0.7152 10 6 4.9695 5.4217 -0.3780 11 6 5.4136 6.7537 -0.5466 12 1 4.8209 7.4523 -1.1184 13 6 6.6213 7.1665 0.0276 14 7 7.4968 6.2772 0.4200 15 14 6.9832 8.9875 0.2336 16 1 6.4851 9.4447 1.5557 17 1 8.4486 9.2134 0.1516 18 1 6.3036 9.7521 -0.8429 19 6 4.0718 4.8433 -1.2942 20 7 3.6662 3.6025 -1.1355 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 5.0657 0.7870 1.2542 29 1 3.7352 1.3865 2.0520 30 1 5.2744 2.7282 1.6478 31 1 6.0993 5.0574 1.4423 32 1 8.3337 6.5634 0.8183 33 1 3.7170 5.4204 -2.1353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238246549.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:58 Heat of formation + Delta-G solvation = -14.961037 kcal Electronic energy + Delta-G solvation = -14463.929461 eV Core-core repulsion = 12101.364593 eV Total energy + Delta-G solvation = -2362.564868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54738 -37.58635 -35.79785 -34.05045 -32.53344 -31.25196 -28.94144 -27.26134 -24.36536 -23.54453 -22.18598 -21.38068 -19.30066 -17.44164 -17.22154 -16.91183 -16.22242 -15.66325 -15.57333 -14.75380 -14.46015 -14.30534 -13.89132 -13.60105 -13.55841 -13.17855 -12.99472 -12.72973 -12.39992 -12.30346 -11.81205 -11.79750 -11.54111 -11.39444 -11.19477 -10.19552 -10.07677 -9.63492 -9.45456 -8.73628 -6.47460 0.72040 1.01008 1.36703 1.49349 1.50356 2.15494 2.65342 3.61159 3.75982 3.85387 4.12322 4.24953 4.32526 4.47650 4.58410 4.72197 4.77600 4.90406 4.98689 5.09600 5.12481 5.18227 5.19560 5.29230 5.34845 5.52168 5.64286 5.72477 5.87838 5.98038 6.24820 6.46228 6.59976 6.71925 6.75189 7.70452 8.19955 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.061698 B = 0.005989 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.713497 B = 4674.033703 C = 4947.652683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.091 4.091 4 C 0.169 3.831 5 H 0.072 0.928 6 N -0.824 5.824 7 C -0.048 4.048 8 C -0.152 4.152 9 C -0.156 4.156 10 C 0.034 3.966 11 C -0.484 4.484 12 H 0.084 0.916 13 C 0.036 3.964 14 N -0.819 5.819 15 Si 0.988 3.012 16 H -0.261 1.261 17 H -0.267 1.267 18 H -0.256 1.256 19 C -0.039 4.039 20 N -0.468 5.468 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.343 0.657 29 H 0.342 0.658 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.292 0.708 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 -5.147 2.834 7.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.129 4.129 4 C 0.056 3.944 5 H 0.090 0.910 6 N -0.353 5.353 7 C -0.188 4.188 8 C -0.172 4.172 9 C -0.183 4.183 10 C 0.030 3.970 11 C -0.513 4.513 12 H 0.102 0.898 13 C -0.180 4.180 14 N -0.445 5.445 15 Si 0.808 3.192 16 H -0.185 1.185 17 H -0.191 1.191 18 H -0.180 1.180 19 C -0.200 4.200 20 N -0.176 5.176 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.243 -6.223 2.123 8.409 hybrid contribution 1.595 2.307 0.658 2.881 sum -3.648 -3.915 2.781 6.031 Atomic orbital electron populations 1.21774 0.95529 1.01949 1.01436 1.21390 0.95642 0.95307 1.02310 1.21428 0.92965 0.97653 1.00874 1.19871 0.95347 0.86503 0.92702 0.91041 1.59149 1.16416 1.56250 1.03480 1.21965 1.02462 0.99043 0.95376 1.21678 0.98851 0.96307 1.00322 1.21706 1.02915 0.94933 0.98699 1.18854 0.92097 0.94745 0.91291 1.19860 1.05220 0.96016 1.30205 0.89824 1.26847 0.94434 1.05004 0.91733 1.69826 1.07015 1.38290 1.29323 0.85099 0.78298 0.75757 0.79998 1.18545 1.19100 1.18009 1.22645 1.04564 0.92175 1.00650 1.66787 1.23065 1.06349 1.21448 0.92989 0.93339 0.91587 0.92586 0.90921 0.93474 0.92875 0.84360 0.84503 0.85539 0.86705 0.89670 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.11 -2.80 5.82 30.60 0.18 -2.62 16 3 C -0.09 -2.90 4.78 30.59 0.15 -2.76 16 4 C 0.17 5.87 3.22 44.17 0.14 6.01 16 5 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 6 N -0.82 -23.65 7.98 -171.80 -1.37 -25.02 16 7 C -0.05 -2.11 6.18 42.61 0.26 -1.85 16 8 C -0.15 -6.77 9.03 22.31 0.20 -6.57 16 9 C -0.16 -8.06 8.81 22.92 0.20 -7.85 16 10 C 0.03 1.85 5.59 -21.19 -0.12 1.73 16 11 C -0.48 -25.41 9.09 23.47 0.21 -25.20 16 12 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 13 C 0.04 1.74 5.18 85.26 0.44 2.19 16 14 N -0.82 -41.22 10.91 21.83 0.24 -40.98 16 15 Si 0.99 36.54 29.59 68.60 2.03 38.57 16 16 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 17 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 18 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 19 C -0.04 -2.02 10.98 85.35 0.94 -1.08 16 20 N -0.47 -22.81 9.74 -181.70 -1.77 -24.58 16 21 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.83 7.75 -2.39 -0.02 1.81 16 26 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.05 1.89 7.79 -2.39 -0.02 1.87 16 28 H 0.34 9.44 8.07 -89.69 -0.72 8.72 16 29 H 0.34 9.48 8.26 -89.70 -0.74 8.74 16 30 H 0.13 4.72 6.16 -2.91 -0.02 4.70 16 31 H 0.12 6.08 6.19 -2.91 -0.02 6.06 16 32 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 33 H 0.13 6.34 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -56.88 275.47 2.10 -54.78 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -0.35 Total: 37.80 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 3.32 Total: -40.58 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -2.90 Total: -90.58 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Total: -56.88 2.10 -54.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238246549.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.822 kcal (2) G-P(sol) polarization free energy of solvation -56.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds