Wall clock time and date at job start Mon Mar 30 2020 03:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86802 * 120.00407 * 2 1 4 4 H 1.48501 * 109.47160 * 239.99995 * 3 2 1 5 5 H 1.48503 * 109.46649 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47147 * 119.99954 * 3 2 1 7 7 C 1.40022 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 159.45136 * 7 2 1 9 9 C 1.40564 * 119.99809 * 339.44779 * 7 2 1 10 10 C 1.46420 * 120.72239 * 324.42611 * 9 7 2 11 11 C 1.41088 * 133.94962 * 359.74981 * 10 9 7 12 12 C 1.34901 * 107.79246 * 179.97438 * 11 10 9 13 13 N 1.36551 * 109.51157 * 359.97438 * 12 11 10 14 14 H 0.96992 * 125.57025 * 180.02562 * 13 12 11 15 15 C 1.37907 * 108.85548 * 0.02562 * 13 12 11 16 16 C 1.39063 * 133.39777 * 180.02562 * 15 13 12 17 17 C 1.38293 * 121.07032 * 179.97438 * 16 15 13 18 18 C 1.37833 * 121.55691 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 119.99493 * 180.02562 * 18 17 16 20 20 H 0.97007 * 119.99881 * 4.82060 * 1 2 3 21 21 H 1.08002 * 126.10274 * 359.97438 * 11 10 9 22 22 H 1.07998 * 125.24457 * 180.02562 * 12 11 10 23 23 H 1.07996 * 119.46648 * 359.95119 * 16 15 13 24 24 H 1.07998 * 119.21881 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0084 -1.2127 -0.0005 8 1 3.0368 -1.2423 -0.3288 9 6 1.3725 -2.3914 0.4263 10 6 0.3984 -2.3623 1.5191 11 6 -0.1168 -1.3406 2.3445 12 6 -1.0025 -1.9032 3.1924 13 7 -1.0799 -3.2443 2.9475 14 1 -1.6458 -3.8729 3.4223 15 6 -0.2218 -3.5590 1.9147 16 6 0.0971 -4.7468 1.2658 17 6 1.0178 -4.7716 0.2342 18 6 1.6543 -3.6258 -0.1923 19 17 2.8028 -3.7034 -1.4917 20 1 -0.4850 0.8371 -0.0706 21 1 0.1501 -0.2949 2.3047 22 1 -1.5645 -1.3742 3.9479 23 1 -0.3817 -5.6649 1.5726 24 1 1.2434 -5.7109 -0.2487 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238534043.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:49 Heat of formation + Delta-G solvation = 40.958424 kcal Electronic energy + Delta-G solvation = -12518.253717 eV Core-core repulsion = 10229.438012 eV Total energy + Delta-G solvation = -2288.815705 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.86233 -35.89837 -34.42984 -33.66241 -30.36019 -28.60571 -27.53073 -24.90512 -21.34369 -20.25824 -19.44259 -17.86463 -15.81236 -15.37067 -14.93697 -14.22552 -13.25824 -13.20523 -12.84348 -12.12603 -11.76354 -11.56164 -11.27292 -11.22468 -11.00935 -10.56560 -10.31329 -9.89946 -9.46746 -9.29116 -9.00726 -8.26036 -6.96896 -6.80269 -6.42568 -4.36925 2.45149 2.93530 3.04581 3.08417 3.20758 3.86825 3.90053 4.03833 4.26727 4.59096 5.51080 5.96678 6.08940 6.39378 6.62307 6.82544 6.92389 7.06541 7.12016 7.38445 7.70457 7.78033 7.82869 8.09413 8.22612 8.48726 8.69995 8.71468 8.81700 10.07440 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.016501 C = 0.009729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.962582 B = 1696.475284 C = 2877.170019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.082 3.918 3 Si 0.904 3.096 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.441 4.441 8 H 0.092 0.908 9 C 0.178 3.822 10 C -0.136 4.136 11 C -0.117 4.117 12 C -0.050 4.050 13 N -0.596 5.596 14 H 0.399 0.601 15 C 0.113 3.887 16 C -0.262 4.262 17 C -0.036 4.036 18 C -0.189 4.189 19 Cl -0.124 7.124 20 H 0.285 0.715 21 H 0.124 0.876 22 H 0.146 0.854 23 H 0.090 0.910 24 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 -0.886 3.138 3.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.109 0.891 9 C 0.174 3.826 10 C -0.142 4.142 11 C -0.142 4.142 12 C -0.174 4.174 13 N -0.199 5.199 14 H 0.234 0.766 15 C 0.005 3.995 16 C -0.285 4.285 17 C -0.056 4.056 18 C -0.218 4.218 19 Cl -0.096 7.096 20 H 0.096 0.904 21 H 0.142 0.858 22 H 0.163 0.837 23 H 0.108 0.892 24 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.014 -0.754 3.158 3.401 hybrid contribution -0.018 0.495 0.059 0.499 sum -1.032 -0.259 3.217 3.388 Atomic orbital electron populations 1.69876 1.07708 1.29964 1.30491 1.25955 0.94621 1.01191 0.92313 0.86420 0.80429 0.79998 0.80377 1.18750 1.20202 1.18453 1.19454 0.99798 0.91119 1.36479 0.89052 1.17756 0.87287 0.90753 0.86846 1.18865 1.04271 0.91560 0.99471 1.20375 0.99151 0.98180 0.96498 1.21416 1.06765 0.83435 1.05791 1.41536 1.38484 1.07968 1.31874 0.76637 1.18183 0.94154 0.95945 0.91241 1.18888 1.09972 0.94056 1.05581 1.19935 0.94966 0.95524 0.95181 1.20215 1.06443 0.95644 0.99473 1.98178 1.61486 1.98653 1.51278 0.90403 0.85831 0.83692 0.89181 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.92 10.52 55.55 0.58 -18.34 14 2 C 0.08 1.99 4.35 -17.31 -0.08 1.91 14 3 Si 0.90 18.13 29.61 -169.99 -5.03 13.10 14 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 14 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 14 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 14 7 C -0.44 -11.48 8.29 -38.04 -0.32 -11.79 14 8 H 0.09 2.34 7.49 -52.49 -0.39 1.94 14 9 C 0.18 4.74 5.54 -104.71 -0.58 4.16 14 10 C -0.14 -3.51 5.59 -104.68 -0.58 -4.09 14 11 C -0.12 -2.73 8.91 -39.69 -0.35 -3.09 14 12 C -0.05 -0.99 11.86 -16.64 -0.20 -1.19 14 13 N -0.60 -11.71 6.14 -10.58 -0.06 -11.77 14 14 H 0.40 6.21 8.96 -40.82 -0.37 5.84 14 15 C 0.11 2.66 7.27 -83.98 -0.61 2.05 14 16 C -0.26 -5.91 10.02 -39.26 -0.39 -6.30 14 17 C -0.04 -0.83 9.72 -39.71 -0.39 -1.21 14 18 C -0.19 -4.73 6.38 -38.72 -0.25 -4.98 14 19 Cl -0.12 -2.80 27.80 -51.86 -1.44 -4.24 14 20 H 0.28 6.47 8.30 -40.82 -0.34 6.13 14 21 H 0.12 2.89 6.68 -52.49 -0.35 2.54 14 22 H 0.15 2.29 8.06 -52.49 -0.42 1.87 14 23 H 0.09 1.77 8.06 -52.49 -0.42 1.35 14 24 H 0.10 2.01 8.06 -52.49 -0.42 1.58 14 LS Contribution 228.88 15.07 3.45 3.45 Total: -1.00 -27.94 228.88 -7.76 -35.71 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -1.51 Total: 6.63 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -3.74 Total: -24.54 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.52 Total: -30.11 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -1.44 Total: -4.24 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -27.94 -7.76 -35.71 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238534043.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.664 kcal (2) G-P(sol) polarization free energy of solvation -27.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds