Wall clock time and date at job start Mon Mar 30 2020 03:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86802 * 120.00407 * 2 1 4 4 H 1.48501 * 109.47160 * 239.99995 * 3 2 1 5 5 H 1.48503 * 109.46649 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47147 * 119.99954 * 3 2 1 7 7 C 1.40022 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 159.45136 * 7 2 1 9 9 C 1.40564 * 119.99809 * 339.44779 * 7 2 1 10 10 C 1.46420 * 120.72239 * 324.42611 * 9 7 2 11 11 C 1.41088 * 133.94962 * 359.74981 * 10 9 7 12 12 C 1.34901 * 107.79246 * 179.97438 * 11 10 9 13 13 N 1.36551 * 109.51157 * 359.97438 * 12 11 10 14 14 H 0.96992 * 125.57025 * 180.02562 * 13 12 11 15 15 C 1.37907 * 108.85548 * 0.02562 * 13 12 11 16 16 C 1.39063 * 133.39777 * 180.02562 * 15 13 12 17 17 C 1.38293 * 121.07032 * 179.97438 * 16 15 13 18 18 C 1.37833 * 121.55691 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 119.99493 * 180.02562 * 18 17 16 20 20 H 0.97007 * 119.99881 * 4.82060 * 1 2 3 21 21 H 1.08002 * 126.10274 * 359.97438 * 11 10 9 22 22 H 1.07998 * 125.24457 * 180.02562 * 12 11 10 23 23 H 1.07996 * 119.46648 * 359.95119 * 16 15 13 24 24 H 1.07998 * 119.21881 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0084 -1.2127 -0.0005 8 1 3.0368 -1.2423 -0.3288 9 6 1.3725 -2.3914 0.4263 10 6 0.3984 -2.3623 1.5191 11 6 -0.1168 -1.3406 2.3445 12 6 -1.0025 -1.9032 3.1924 13 7 -1.0799 -3.2443 2.9475 14 1 -1.6458 -3.8729 3.4223 15 6 -0.2218 -3.5590 1.9147 16 6 0.0971 -4.7468 1.2658 17 6 1.0178 -4.7716 0.2342 18 6 1.6543 -3.6258 -0.1923 19 17 2.8028 -3.7034 -1.4917 20 1 -0.4850 0.8371 -0.0706 21 1 0.1501 -0.2949 2.3047 22 1 -1.5645 -1.3742 3.9479 23 1 -0.3817 -5.6649 1.5726 24 1 1.2434 -5.7109 -0.2487 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238534043.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:49 Heat of formation + Delta-G solvation = 25.367259 kcal Electronic energy + Delta-G solvation = -12518.929801 eV Core-core repulsion = 10229.438012 eV Total energy + Delta-G solvation = -2289.491789 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.57296 -37.67641 -36.22836 -35.44739 -32.13605 -30.36786 -29.28200 -26.72341 -23.10323 -22.02754 -21.15991 -19.63643 -17.56729 -17.10542 -16.68779 -15.91354 -15.01374 -14.92234 -14.54684 -13.85393 -13.46985 -13.32714 -13.00505 -12.93919 -12.67345 -12.16464 -12.11826 -11.68107 -11.23708 -11.06447 -10.79978 -10.03702 -8.75690 -8.57552 -8.17723 -6.24078 0.69436 1.16529 1.41206 1.50376 1.55354 2.05823 2.23194 2.32052 2.67613 2.79254 3.65399 4.40290 4.52341 4.67578 4.86486 5.11695 5.16740 5.28112 5.36856 5.60682 5.91993 5.99928 6.06810 6.28460 6.41622 6.66298 6.86921 6.97443 7.19569 8.32194 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.016501 C = 0.009729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.962582 B = 1696.475284 C = 2877.170019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.050 3.950 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.476 4.476 8 H 0.081 0.919 9 C 0.142 3.858 10 C -0.165 4.165 11 C -0.162 4.162 12 C -0.011 4.011 13 N -0.578 5.578 14 H 0.422 0.578 15 C 0.088 3.912 16 C -0.252 4.252 17 C -0.051 4.051 18 C -0.212 4.212 19 Cl -0.116 7.116 20 H 0.291 0.709 21 H 0.114 0.886 22 H 0.195 0.805 23 H 0.122 0.878 24 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 -0.974 4.413 4.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.170 4.170 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.503 4.503 8 H 0.099 0.901 9 C 0.138 3.862 10 C -0.170 4.170 11 C -0.187 4.187 12 C -0.137 4.137 13 N -0.182 5.182 14 H 0.261 0.739 15 C -0.021 4.021 16 C -0.274 4.274 17 C -0.071 4.071 18 C -0.241 4.241 19 Cl -0.087 7.087 20 H 0.102 0.898 21 H 0.132 0.868 22 H 0.212 0.788 23 H 0.140 0.860 24 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.092 -0.882 4.443 4.989 hybrid contribution 0.227 0.408 -0.256 0.533 sum -1.864 -0.474 4.187 4.608 Atomic orbital electron populations 1.69910 1.08860 1.31014 1.31186 1.26601 0.95267 1.03706 0.91464 0.85440 0.79200 0.76262 0.80052 1.18793 1.18728 1.18425 1.19545 0.99678 0.92437 1.38644 0.90115 1.18186 0.88566 0.91616 0.87868 1.19281 1.04615 0.93382 0.99726 1.20452 1.01840 0.97882 0.98548 1.22049 1.04133 0.83259 1.04277 1.41524 1.37558 1.08453 1.30651 0.73893 1.18388 0.95293 0.95705 0.92704 1.19303 1.08756 0.95018 1.04359 1.20244 0.95156 0.95926 0.95801 1.20539 1.07249 0.96181 1.00130 1.98158 1.61173 1.98630 1.50787 0.89794 0.86811 0.78816 0.85985 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.85 10.52 21.84 0.23 -39.62 14 2 C 0.05 2.45 4.35 85.27 0.37 2.82 14 3 Si 0.97 37.67 29.61 68.60 2.03 39.70 14 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 14 5 H -0.26 -9.51 7.11 99.48 0.71 -8.80 14 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 14 7 C -0.48 -25.57 8.29 23.27 0.19 -25.38 14 8 H 0.08 4.32 7.49 -2.91 -0.02 4.30 14 9 C 0.14 7.73 5.54 -19.92 -0.11 7.62 14 10 C -0.16 -8.48 5.59 -19.90 -0.11 -8.59 14 11 C -0.16 -7.49 8.91 22.20 0.20 -7.29 14 12 C -0.01 -0.41 11.86 83.19 0.99 0.57 14 13 N -0.58 -20.78 6.14 -187.39 -1.15 -21.93 14 14 H 0.42 11.30 8.96 -92.71 -0.83 10.47 14 15 C 0.09 4.00 7.27 38.93 0.28 4.29 14 16 C -0.25 -10.88 10.02 22.48 0.23 -10.65 14 17 C -0.05 -2.32 9.72 22.19 0.22 -2.11 14 18 C -0.21 -10.77 6.38 22.83 0.15 -10.63 14 19 Cl -0.12 -5.30 27.80 -2.72 -0.08 -5.37 14 20 H 0.29 13.32 8.30 -92.70 -0.77 12.55 14 21 H 0.11 5.37 6.68 -2.91 -0.02 5.35 14 22 H 0.19 5.11 8.06 -2.91 -0.02 5.08 14 23 H 0.12 4.37 8.06 -2.91 -0.02 4.35 14 24 H 0.12 4.79 8.06 -2.91 -0.02 4.77 14 Total: -1.00 -61.03 228.88 3.84 -57.19 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.41 Total: 19.37 kcal Atomic # 6 Polarization: -51.75 SS G_CDS: 2.40 Total: -49.35 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.92 Total: -61.55 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Atomic # 17 Polarization: -5.30 SS G_CDS: -0.08 Total: -5.37 kcal Total: -61.03 3.84 -57.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238534043.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.562 kcal (2) G-P(sol) polarization free energy of solvation -61.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds