Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86790 * 120.00453 * 2 1 4 4 H 1.48507 * 109.47410 * 274.98726 * 3 2 1 5 5 H 1.48499 * 109.47230 * 34.98960 * 3 2 1 6 6 H 1.48500 * 109.47440 * 154.99097 * 3 2 1 7 7 C 1.40004 * 119.99362 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99840 * 186.48489 * 7 2 1 9 9 C 1.39789 * 120.00142 * 6.49543 * 7 2 1 10 10 C 1.38764 * 126.08701 * 173.51106 * 9 7 2 11 11 N 1.30040 * 114.88783 * 179.76077 * 10 9 7 12 12 C 1.30941 * 117.54726 * 0.48393 * 11 10 9 13 13 C 1.47267 * 125.13746 * 179.80047 * 12 11 10 14 14 C 1.46994 * 127.19281 * 359.97438 * 13 12 11 15 15 C 1.34208 * 106.00834 * 180.10273 * 14 13 12 16 16 O 1.34217 * 109.17400 * 359.63370 * 15 14 13 17 17 C 1.33904 * 110.87215 * 0.24553 * 16 15 14 18 18 S 1.76076 * 109.71893 * 359.54157 * 12 11 10 19 19 H 0.97011 * 119.99549 * 359.97438 * 1 2 3 20 20 H 1.07998 * 122.56122 * 0.04135 * 10 9 7 21 21 H 1.07994 * 126.99834 * 0.02562 * 14 13 12 22 22 H 1.07998 * 125.41484 * 179.90539 * 15 14 13 23 23 H 1.08001 * 125.83226 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 2.3854 2.1072 -1.3948 5 1 1.4974 2.6198 0.8028 6 1 3.5895 1.4118 0.5919 7 6 2.0090 -1.2126 -0.0005 8 1 3.0839 -1.2157 0.1051 9 6 1.3167 -2.4192 -0.1380 10 6 1.8861 -3.6764 -0.2816 11 7 1.0349 -4.6538 -0.3879 12 6 -0.2392 -4.3531 -0.3588 13 6 -1.3417 -5.3231 -0.4692 14 6 -1.2307 -6.7800 -0.6299 15 6 -2.4891 -7.2431 -0.6870 16 8 -3.3431 -6.2144 -0.5691 17 6 -2.6814 -5.0577 -0.4379 18 16 -0.4349 -2.6145 -0.1604 19 1 -0.4850 0.8402 0.0004 20 1 2.9546 -3.8320 -0.2989 21 1 -0.3216 -7.3597 -0.6909 22 1 -2.7699 -8.2793 -0.8045 23 1 -3.1302 -4.0817 -0.3259 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238553402.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = 26.518292 kcal Electronic energy + Delta-G solvation = -11883.835502 eV Core-core repulsion = 9596.437332 eV Total energy + Delta-G solvation = -2287.398170 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.51218 -37.22819 -34.45287 -32.25304 -29.73285 -28.88762 -25.45603 -23.14819 -20.93698 -20.19448 -18.61498 -18.07333 -16.47091 -15.39430 -15.22786 -15.17161 -14.17945 -13.57428 -12.67027 -12.57254 -12.16452 -12.11135 -11.96901 -11.62075 -11.44814 -11.03552 -10.57713 -10.05849 -9.45628 -9.18181 -8.28026 -8.00449 -7.71180 -7.20109 -6.99808 -4.68886 2.02880 2.54586 2.80078 2.85059 2.87206 3.29187 3.43118 3.51169 3.70409 3.87757 4.36166 5.02521 5.36585 5.57946 5.97526 6.20804 6.50030 6.57440 6.82074 6.87246 7.02059 7.20720 7.54275 7.75087 7.85415 8.15008 8.21946 9.56256 9.66922 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.069234 B = 0.007447 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.326994 B = 3759.085899 C = 4150.252237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.045 3.955 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.354 4.354 8 H 0.103 0.897 9 C 0.004 3.996 10 C -0.161 4.161 11 N -0.411 5.411 12 C -0.125 4.125 13 C -0.037 4.037 14 C -0.197 4.197 15 C -0.057 4.057 16 O -0.190 6.190 17 C -0.083 4.083 18 S 0.095 5.905 19 H 0.301 0.699 20 H 0.139 0.861 21 H 0.145 0.855 22 H 0.194 0.806 23 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 -0.853 -0.262 2.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.179 4.179 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.392 4.392 8 H 0.121 0.879 9 C -0.120 4.120 10 C -0.319 4.319 11 N -0.123 5.123 12 C -0.386 4.386 13 C -0.041 4.041 14 C -0.218 4.218 15 C -0.124 4.124 16 O -0.087 6.087 17 C -0.152 4.152 18 S 0.347 5.653 19 H 0.114 0.886 20 H 0.156 0.844 21 H 0.163 0.837 22 H 0.211 0.789 23 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.998 -0.738 -0.248 4.073 hybrid contribution 1.611 0.624 -0.034 1.728 sum -2.387 -0.113 -0.283 2.407 Atomic orbital electron populations 1.69049 1.07824 1.31218 1.30602 1.26351 0.95297 1.03148 0.93055 0.85686 0.80138 0.78065 0.79668 1.18788 1.19496 1.17876 1.19279 0.96209 0.88675 1.35014 0.87902 1.23290 0.94427 0.97232 0.97027 1.21371 0.98125 0.86845 1.25563 1.65457 1.01119 1.36621 1.09105 1.23841 0.91344 0.95685 1.27770 1.19299 0.90908 0.91431 1.02491 1.22802 0.97469 0.93951 1.07603 1.23618 0.88491 0.92093 1.08206 1.83707 1.37677 1.14869 1.72489 1.23799 0.90611 0.88376 1.12381 1.84783 1.06310 1.00088 1.74128 0.88648 0.84384 0.83733 0.78913 0.78581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.64 10.77 55.55 0.60 -17.04 14 2 C 0.04 1.00 5.49 -17.28 -0.09 0.91 14 3 Si 0.94 16.48 29.57 -169.99 -5.03 11.45 14 4 H -0.26 -4.57 7.11 56.52 0.40 -4.17 14 5 H -0.27 -4.61 7.11 56.52 0.40 -4.21 14 6 H -0.26 -4.38 7.11 56.52 0.40 -3.98 14 7 C -0.35 -8.62 9.30 -38.34 -0.36 -8.98 14 8 H 0.10 2.31 7.86 -52.48 -0.41 1.89 14 9 C 0.00 0.11 6.23 -38.81 -0.24 -0.13 14 10 C -0.16 -4.24 11.35 -18.12 -0.21 -4.45 14 11 N -0.41 -11.11 10.51 -10.48 -0.11 -11.22 14 12 C -0.12 -3.23 7.48 -14.26 -0.11 -3.34 14 13 C -0.04 -0.83 6.32 -103.27 -0.65 -1.49 14 14 C -0.20 -3.87 11.14 -37.46 -0.42 -4.29 14 15 C -0.06 -0.94 12.03 29.31 0.35 -0.59 14 16 O -0.19 -3.43 10.54 7.00 0.07 -3.36 14 17 C -0.08 -1.64 11.93 30.14 0.36 -1.29 14 18 S 0.09 2.40 20.29 -107.50 -2.18 0.22 14 19 H 0.30 6.18 8.30 -40.82 -0.34 5.84 14 20 H 0.14 3.35 8.06 -52.49 -0.42 2.93 14 21 H 0.14 2.73 8.06 -52.49 -0.42 2.30 14 22 H 0.19 2.20 8.06 -52.49 -0.42 1.77 14 23 H 0.20 3.47 8.06 -52.49 -0.42 3.05 14 LS Contribution 232.64 15.07 3.51 3.51 Total: -1.00 -28.89 232.64 -5.74 -34.63 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -1.24 Total: 5.43 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -1.36 Total: -23.63 kcal Atomic # 7 Polarization: -28.74 SS G_CDS: 0.49 Total: -28.26 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: 0.07 Total: -3.36 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.03 Total: 11.45 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.18 Total: 0.22 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.89 -5.74 -34.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238553402.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.152 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds