Wall clock time and date at job start Mon Mar 30 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30989 * 1 3 3 Si 1.86808 * 119.99747 * 2 1 4 4 H 1.48499 * 109.47147 * 270.00075 * 3 2 1 5 5 H 1.48505 * 109.46847 * 30.00190 * 3 2 1 6 6 H 1.48494 * 109.47037 * 149.99650 * 3 2 1 7 7 C 1.39792 * 120.00697 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00331 * 163.23764 * 7 2 1 9 9 C 1.40814 * 119.99573 * 343.24061 * 7 2 1 10 10 C 1.38826 * 120.56760 * 334.31452 * 9 7 2 11 11 N 1.35418 * 120.72838 * 179.97438 * 10 9 7 12 12 H 0.96991 * 119.00220 * 179.97438 * 11 10 9 13 13 C 1.34098 * 121.98860 * 359.97438 * 11 10 9 14 14 O 1.21917 * 119.27308 * 180.02562 * 13 11 10 15 15 C 1.41613 * 121.45526 * 0.02562 * 13 11 10 16 16 S 1.75967 * 131.04565 * 180.02562 * 15 13 11 17 17 C 1.75571 * 91.42587 * 179.97438 * 16 15 13 18 18 C 1.32913 * 110.46112 * 0.02562 * 17 16 15 19 19 C 1.38941 * 119.56000 * 0.02562 * 15 13 11 20 20 H 0.96995 * 119.99969 * 359.97438 * 1 2 3 21 21 H 1.08002 * 119.63234 * 359.97438 * 10 9 7 22 22 H 1.07994 * 124.77285 * 179.97438 * 17 16 15 23 23 H 1.07997 * 122.11487 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.4913 2.0465 -1.4001 5 1 1.4412 2.6527 0.7001 6 1 3.5413 1.4403 0.7001 7 6 2.0090 -1.2105 -0.0005 8 1 3.0545 -1.2302 -0.2703 9 6 1.3498 -2.4043 0.3506 10 6 0.2356 -2.3784 1.1783 11 7 -0.4011 -3.5244 1.5176 12 1 -1.1769 -3.4773 2.0978 13 6 0.0087 -4.7223 1.0757 14 8 -0.6019 -5.7226 1.4120 15 6 1.1351 -4.8513 0.2272 16 16 1.8835 -6.2723 -0.4919 17 6 3.1027 -5.2853 -1.2804 18 6 2.9174 -4.0008 -0.9936 19 6 1.8357 -3.7154 -0.1593 20 1 -0.4850 0.8400 0.0004 21 1 -0.1274 -1.4338 1.5557 22 1 3.8927 -5.6681 -1.9094 23 1 3.5627 -3.2268 -1.3822 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238619064.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:25 Heat of formation + Delta-G solvation = -15.250987 kcal Electronic energy + Delta-G solvation = -12369.791214 eV Core-core repulsion = 10080.581792 eV Total energy + Delta-G solvation = -2289.209422 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.45906 -38.38476 -36.78024 -35.41624 -31.86140 -30.46287 -26.83356 -25.42152 -23.59077 -21.64509 -20.15809 -18.70350 -17.88446 -17.12557 -16.76754 -16.48239 -16.19305 -15.09314 -14.83507 -14.28653 -13.66338 -13.42461 -13.35090 -12.85689 -12.60304 -12.47640 -12.15775 -11.86628 -11.60411 -11.09309 -10.90920 -9.93458 -9.70105 -8.59247 -8.45755 -6.12783 -0.36614 0.66097 1.03237 1.15960 1.48768 1.51489 1.61105 1.70326 2.28853 2.58181 2.71828 3.41857 4.02812 4.17430 4.41417 4.59016 4.88322 5.05041 5.24118 5.35772 5.46640 5.75470 6.08935 6.31760 6.55710 6.90894 6.95199 7.38042 8.44070 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.037654 B = 0.010331 C = 0.008291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.436864 B = 2709.616206 C = 3376.392680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.471 4.471 8 H 0.085 0.915 9 C 0.028 3.972 10 C -0.049 4.049 11 N -0.567 5.567 12 H 0.411 0.589 13 C 0.513 3.487 14 O -0.640 6.640 15 C -0.316 4.316 16 S 0.146 5.854 17 C -0.174 4.174 18 C -0.140 4.140 19 C -0.018 4.018 20 H 0.287 0.713 21 H 0.161 0.839 22 H 0.213 0.787 23 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.854 -0.969 -2.013 6.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.021 3.979 10 C -0.175 4.175 11 N -0.198 5.198 12 H 0.248 0.752 13 C 0.313 3.687 14 O -0.533 6.533 15 C -0.434 4.434 16 S 0.410 5.590 17 C -0.310 4.310 18 C -0.170 4.170 19 C -0.033 4.033 20 H 0.097 0.903 21 H 0.178 0.822 22 H 0.229 0.771 23 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.192 -2.958 -1.927 6.279 hybrid contribution -0.161 2.397 0.257 2.417 sum 5.031 -0.561 -1.670 5.330 Atomic orbital electron populations 1.69826 1.08611 1.30325 1.38191 1.26522 0.95444 1.03884 0.91874 0.85218 0.79098 0.76429 0.79094 1.19305 1.19797 1.18258 1.19193 0.97917 0.90670 1.42439 0.89653 1.18114 0.94584 0.90369 0.94799 1.21985 1.01391 0.88158 1.05951 1.42337 1.28558 1.05934 1.42962 0.75208 1.15808 0.85857 0.83121 0.83948 1.90763 1.60958 1.36353 1.65260 1.23835 1.06285 0.99413 1.13882 1.83471 1.23354 1.06736 1.45489 1.26050 1.03812 0.95867 1.05278 1.20000 0.98704 0.97642 1.00624 1.20308 0.94602 0.93461 0.94963 0.90270 0.82181 0.77064 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -40.18 10.99 21.81 0.24 -39.94 14 2 C 0.04 1.60 5.14 85.19 0.44 2.04 14 3 Si 0.98 35.08 29.59 68.60 2.03 37.11 14 4 H -0.27 -9.41 7.11 99.48 0.71 -8.70 14 5 H -0.27 -9.52 7.11 99.48 0.71 -8.81 14 6 H -0.26 -9.07 7.11 99.48 0.71 -8.36 14 7 C -0.47 -22.61 8.86 23.28 0.21 -22.40 14 8 H 0.09 3.86 7.65 -2.91 -0.02 3.84 14 9 C 0.03 1.37 5.74 -19.67 -0.11 1.25 14 10 C -0.05 -2.34 9.89 84.28 0.83 -1.50 14 11 N -0.57 -25.90 5.16 -317.09 -1.64 -27.54 14 12 H 0.41 16.29 8.85 -92.71 -0.82 15.46 14 13 C 0.51 25.54 7.67 85.18 0.65 26.19 14 14 O -0.64 -34.25 17.85 -5.05 -0.09 -34.34 14 15 C -0.32 -14.68 6.45 23.27 0.15 -14.53 14 16 S 0.15 5.28 23.27 -56.49 -1.31 3.96 14 17 C -0.17 -5.24 11.14 66.65 0.74 -4.50 14 18 C -0.14 -5.13 9.81 21.41 0.21 -4.92 14 19 C -0.02 -0.81 6.03 -19.96 -0.12 -0.93 14 20 H 0.29 12.52 8.30 -92.71 -0.77 11.75 14 21 H 0.16 7.69 6.15 -2.91 -0.02 7.68 14 22 H 0.21 4.15 8.06 -2.91 -0.02 4.13 14 23 H 0.16 5.15 7.84 -2.91 -0.02 5.13 14 Total: -1.00 -60.59 225.75 2.67 -57.92 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.44 Total: 22.11 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.00 Total: -19.30 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -1.40 Total: -67.47 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.09 Total: -34.34 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -1.31 Total: 3.96 kcal Total: -60.59 2.67 -57.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619064.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.669 kcal (2) G-P(sol) polarization free energy of solvation -60.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds