Wall clock time and date at job start Mon Mar 30 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86797 * 119.99921 * 2 1 4 4 H 1.48491 * 109.47318 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46893 * 300.00141 * 3 2 1 6 6 H 1.48506 * 109.47230 * 59.99639 * 3 2 1 7 7 C 1.40352 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00108 * 179.97438 * 7 2 1 9 9 C 1.39937 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.37372 * 124.94227 * 180.02562 * 9 7 2 11 11 C 1.38779 * 115.04749 * 179.97438 * 10 9 7 12 12 C 1.47956 * 129.34867 * 179.97438 * 11 10 9 13 13 C 1.33932 * 119.53417 * 180.02562 * 12 11 10 14 14 N 1.36665 * 121.44466 * 359.95033 * 13 12 11 15 15 H 0.96993 * 119.11611 * 180.02562 * 14 13 12 16 16 C 1.34251 * 121.76938 * 0.02614 * 14 13 12 17 17 O 1.21977 * 119.66222 * 180.02562 * 16 14 13 18 18 C 1.39907 * 113.18575 * 359.97438 * 11 10 9 19 19 S 1.75547 * 124.94166 * 0.02562 * 9 7 2 20 20 H 0.96991 * 120.00183 * 0.02562 * 1 2 3 21 21 H 1.08000 * 122.47548 * 359.95391 * 10 9 7 22 22 H 1.08002 * 120.22980 * 359.97438 * 12 11 10 23 23 H 1.08001 * 119.27891 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7003 1.3465 -0.0006 5 1 1.8815 2.3964 -1.2126 6 1 1.8816 2.3965 1.2125 7 6 2.0082 -1.2155 0.0005 8 1 3.0882 -1.2154 0.0001 9 6 1.3086 -2.4274 0.0016 10 6 1.8904 -3.6718 0.0027 11 6 1.0003 -4.7365 0.0043 12 6 1.2765 -6.1901 0.0052 13 6 0.2549 -7.0562 0.0061 14 7 -1.0429 -6.6279 0.0072 15 1 -1.7566 -7.2847 0.0083 16 6 -1.3564 -5.3225 0.0069 17 8 -2.5280 -4.9831 0.0084 18 6 -0.3397 -4.3343 0.0049 19 16 -0.4404 -2.5786 0.0018 20 1 -0.4850 0.8400 -0.0004 21 1 2.9614 -3.8112 0.0021 22 1 2.2947 -6.5501 0.0043 23 1 0.4612 -8.1163 0.0064 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238619436.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:04 Heat of formation + Delta-G solvation = -21.156693 kcal Electronic energy + Delta-G solvation = -12148.547150 eV Core-core repulsion = 9859.081637 eV Total energy + Delta-G solvation = -2289.465512 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.59081 -36.15245 -35.07099 -33.88361 -30.24905 -28.67325 -26.14036 -23.02694 -21.76227 -19.42479 -18.29520 -17.62042 -16.03091 -15.61856 -14.71679 -14.56615 -14.32171 -13.41800 -12.97473 -12.46131 -12.15676 -11.89375 -11.35214 -11.20353 -11.11854 -10.96407 -10.51208 -10.16215 -9.76983 -9.03497 -8.92323 -8.13324 -7.53033 -7.22408 -6.43373 -4.82285 1.98409 2.51615 2.83250 2.88642 2.91041 3.29875 3.56506 3.66673 3.90911 4.23701 4.60188 4.99214 5.25970 5.94291 6.20415 6.44116 6.59482 6.75414 6.99648 7.26941 7.35493 7.66056 7.70498 7.86874 8.01565 8.26824 8.30663 9.18119 9.59844 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.057315 B = 0.008888 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.412766 B = 3149.665145 C = 3628.235160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.048 3.952 3 Si 0.940 3.060 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.366 4.366 8 H 0.101 0.899 9 C 0.034 3.966 10 C -0.332 4.332 11 C 0.042 3.958 12 C -0.180 4.180 13 C 0.077 3.923 14 N -0.640 5.640 15 H 0.399 0.601 16 C 0.569 3.431 17 O -0.592 6.592 18 C -0.446 4.446 19 S 0.218 5.782 20 H 0.304 0.696 21 H 0.108 0.892 22 H 0.126 0.874 23 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -3.442 -0.003 5.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.176 4.176 3 Si 0.763 3.237 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.402 4.402 8 H 0.119 0.881 9 C -0.088 4.088 10 C -0.356 4.356 11 C 0.029 3.971 12 C -0.206 4.206 13 C -0.046 4.046 14 N -0.276 5.276 15 H 0.233 0.767 16 C 0.372 3.628 17 O -0.479 6.479 18 C -0.564 4.564 19 S 0.481 5.519 20 H 0.117 0.883 21 H 0.126 0.874 22 H 0.144 0.856 23 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.662 -2.003 -0.004 2.603 hybrid contribution 1.452 -0.862 0.001 1.688 sum 3.113 -2.865 -0.002 4.231 Atomic orbital electron populations 1.68674 1.07938 1.31461 1.30929 1.26398 0.95150 1.03160 0.92865 0.85682 0.80445 0.78426 0.79170 1.17819 1.19151 1.19144 1.19484 0.95818 0.88544 1.36376 0.88068 1.21868 0.96585 0.95804 0.94548 1.19561 0.97840 0.90203 1.27988 1.18859 0.92148 0.91952 0.94172 1.21376 0.97519 0.91676 1.10029 1.20993 0.83762 0.98383 1.01481 1.42973 1.07301 1.08750 1.68574 0.76663 1.15982 0.88555 0.81077 0.77205 1.90798 1.20390 1.80504 1.56244 1.24081 0.95303 1.02396 1.34574 1.84703 1.02321 0.90845 1.74056 0.88293 0.87414 0.85568 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.99 10.60 55.57 0.59 -17.41 14 2 C 0.05 1.07 5.50 -17.26 -0.09 0.97 14 3 Si 0.94 16.52 29.56 -169.99 -5.03 11.50 14 4 H -0.25 -4.38 7.11 56.52 0.40 -3.98 14 5 H -0.27 -4.62 7.11 56.52 0.40 -4.22 14 6 H -0.27 -4.62 7.11 56.52 0.40 -4.22 14 7 C -0.37 -8.86 9.28 -38.15 -0.35 -9.21 14 8 H 0.10 2.26 7.85 -52.49 -0.41 1.85 14 9 C 0.03 0.88 6.13 -39.26 -0.24 0.64 14 10 C -0.33 -8.23 10.16 -39.70 -0.40 -8.63 14 11 C 0.04 1.01 6.06 -105.09 -0.64 0.38 14 12 C -0.18 -3.41 10.29 -37.11 -0.38 -3.79 14 13 C 0.08 1.26 11.11 -16.91 -0.19 1.07 14 14 N -0.64 -12.13 5.22 -14.89 -0.08 -12.21 14 15 H 0.40 6.16 8.87 -40.82 -0.36 5.80 14 16 C 0.57 14.09 7.71 -15.14 -0.12 13.97 14 17 O -0.59 -16.26 17.88 4.94 0.09 -16.17 14 18 C -0.45 -11.65 6.48 -37.60 -0.24 -11.90 14 19 S 0.22 5.81 20.13 -107.50 -2.16 3.65 14 20 H 0.30 6.34 8.29 -40.82 -0.34 6.00 14 21 H 0.11 2.46 8.06 -52.49 -0.42 2.04 14 22 H 0.13 1.99 8.06 -52.49 -0.42 1.57 14 23 H 0.14 1.57 8.06 -52.49 -0.42 1.14 14 LS Contribution 226.62 15.07 3.42 3.42 Total: -1.00 -30.73 226.62 -7.01 -37.75 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -1.18 Total: 5.98 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.66 Total: -16.51 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: 0.51 Total: -29.61 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.09 Total: -16.17 kcal Atomic # 14 Polarization: 16.52 SS G_CDS: -5.03 Total: 11.50 kcal Atomic # 16 Polarization: 5.81 SS G_CDS: -2.16 Total: 3.65 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.73 -7.01 -37.75 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619436.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.588 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds