Wall clock time and date at job start Mon Mar 30 2020 03:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86791 * 119.99985 * 2 1 4 4 H 1.48497 * 109.47498 * 270.00441 * 3 2 1 5 5 H 1.48498 * 109.47249 * 30.00670 * 3 2 1 6 6 H 1.48501 * 109.46970 * 150.00599 * 3 2 1 7 7 C 1.40011 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.39812 * 120.00197 * 359.97438 * 7 2 1 10 10 C 1.37317 * 124.89757 * 180.02562 * 9 7 2 11 11 C 1.38842 * 115.06391 * 179.97438 * 10 9 7 12 12 C 1.40328 * 113.09578 * 0.02562 * 11 10 9 13 13 C 1.41073 * 119.11532 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.74250 * 0.02562 * 13 12 11 15 15 N 1.36139 * 121.82941 * 359.81609 * 14 13 12 16 16 H 0.97001 * 119.29637 * 180.24657 * 15 14 13 17 17 C 1.34437 * 121.40032 * 0.41582 * 15 14 13 18 18 O 1.21843 * 120.27303 * 179.83278 * 17 15 14 19 19 S 1.75527 * 124.89847 * 359.97438 * 9 7 2 20 20 H 0.96996 * 119.99822 * 359.97438 * 1 2 3 21 21 H 1.07996 * 122.46612 * 0.02562 * 10 9 7 22 22 H 1.07998 * 119.62334 * 179.97438 * 13 12 11 23 23 H 1.08001 * 119.08536 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4404 2.6526 0.7002 6 1 3.5404 1.4400 0.6999 7 6 2.0089 -1.2126 -0.0005 8 1 3.0889 -1.2126 -0.0001 9 6 1.3098 -2.4234 -0.0005 10 6 1.8924 -3.6668 -0.0005 11 6 1.0030 -4.7330 0.0000 12 6 -0.3408 -4.3289 -0.0001 13 6 -1.3531 -5.3115 -0.0001 14 6 -1.0406 -6.6225 0.0005 15 7 0.2510 -7.0528 -0.0026 16 1 0.4339 -8.0054 -0.0057 17 6 1.2782 -6.1855 0.0020 18 8 2.4263 -6.5933 0.0022 19 16 -0.4390 -2.5733 0.0007 20 1 -0.4850 0.8400 0.0004 21 1 2.9634 -3.8053 -0.0001 22 1 -2.3900 -5.0096 0.0002 23 1 -1.8370 -7.3520 0.0009 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238619580.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:06 Heat of formation + Delta-G solvation = -41.306781 kcal Electronic energy + Delta-G solvation = -12138.380514 eV Core-core repulsion = 9848.041228 eV Total energy + Delta-G solvation = -2290.339286 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.42207 -37.73874 -37.19157 -35.62714 -32.46057 -30.35028 -27.27393 -25.11150 -23.51279 -21.71441 -19.89029 -18.91540 -17.88852 -17.61783 -16.50253 -16.28023 -16.18643 -15.20120 -14.68190 -14.24065 -13.68049 -13.67149 -13.23488 -12.96917 -12.62806 -12.47427 -12.24492 -11.99344 -11.41133 -11.38124 -10.71110 -10.24033 -9.01057 -8.90855 -8.48792 -6.44443 0.13282 0.97108 1.31164 1.36984 1.40895 1.54355 1.78217 1.85763 2.14610 2.30102 2.77497 3.12902 3.97684 4.26405 4.57845 4.89542 4.95287 5.16201 5.28348 5.41818 5.71240 5.81884 6.05632 6.08225 6.29773 6.34359 6.56518 7.24104 7.98004 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.055231 B = 0.008770 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.837464 B = 3191.918565 C = 3688.914299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.018 3.982 3 Si 1.013 2.987 4 H -0.257 1.257 5 H -0.255 1.255 6 H -0.259 1.259 7 C -0.412 4.412 8 H 0.095 0.905 9 C -0.002 4.002 10 C -0.335 4.335 11 C -0.132 4.132 12 C -0.282 4.282 13 C -0.139 4.139 14 C 0.047 3.953 15 N -0.597 5.597 16 H 0.423 0.577 17 C 0.526 3.474 18 O -0.610 6.610 19 S 0.196 5.804 20 H 0.314 0.686 21 H 0.086 0.914 22 H 0.155 0.845 23 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 -1.876 -0.002 7.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.200 4.200 3 Si 0.831 3.169 4 H -0.181 1.181 5 H -0.178 1.178 6 H -0.183 1.183 7 C -0.447 4.447 8 H 0.113 0.887 9 C -0.122 4.122 10 C -0.360 4.360 11 C -0.146 4.146 12 C -0.400 4.400 13 C -0.164 4.164 14 C -0.076 4.076 15 N -0.233 5.233 16 H 0.262 0.738 17 C 0.322 3.678 18 O -0.497 6.497 19 S 0.458 5.542 20 H 0.128 0.872 21 H 0.104 0.896 22 H 0.173 0.827 23 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.679 -0.804 0.003 7.721 hybrid contribution 1.957 -0.825 -0.007 2.123 sum -5.722 -1.630 -0.004 5.950 Atomic orbital electron populations 1.68628 1.08764 1.32708 1.32839 1.27154 0.95988 1.05536 0.91363 0.84690 0.78572 0.73636 0.80004 1.18127 1.17847 1.18313 1.19529 0.96010 0.89587 1.39620 0.88733 1.21795 0.96704 0.95912 0.97780 1.19387 0.97449 0.90834 1.28300 1.19769 0.94188 0.92076 1.08583 1.24211 0.95755 1.03120 1.16917 1.19950 0.98525 0.90472 1.07459 1.21798 0.85349 0.96794 1.03618 1.42628 1.05966 1.10692 1.63974 0.73848 1.18319 0.84344 0.87084 0.78088 1.90741 1.22192 1.80646 1.56159 1.84169 1.03325 0.92132 1.74556 0.87227 0.89570 0.82718 0.77230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.79 10.59 21.85 0.23 -36.56 14 2 C 0.02 0.80 5.50 85.26 0.47 1.27 14 3 Si 1.01 34.32 29.56 68.60 2.03 36.34 14 4 H -0.26 -8.40 7.11 99.48 0.71 -7.70 14 5 H -0.25 -7.90 7.11 99.48 0.71 -7.20 14 6 H -0.26 -8.82 7.11 99.48 0.71 -8.12 14 7 C -0.41 -21.54 9.26 23.08 0.21 -21.32 14 8 H 0.09 4.80 7.85 -2.91 -0.02 4.78 14 9 C 0.00 -0.11 6.12 22.43 0.14 0.03 14 10 C -0.33 -19.23 10.06 22.20 0.22 -19.00 14 11 C -0.13 -6.95 6.06 -20.08 -0.12 -7.08 14 12 C -0.28 -13.08 6.57 23.47 0.15 -12.93 14 13 C -0.14 -4.80 9.98 22.17 0.22 -4.58 14 14 C 0.05 1.29 11.10 83.23 0.92 2.22 14 15 N -0.60 -19.97 5.23 -313.56 -1.64 -21.61 14 16 H 0.42 10.78 8.88 -92.71 -0.82 9.96 14 17 C 0.53 25.03 7.95 86.84 0.69 25.72 14 18 O -0.61 -32.89 17.89 -4.81 -0.09 -32.98 14 19 S 0.20 9.54 20.13 -56.49 -1.14 8.40 14 20 H 0.31 12.55 8.30 -92.71 -0.77 11.78 14 21 H 0.09 5.14 8.06 -2.91 -0.02 5.11 14 22 H 0.16 4.25 8.06 -2.91 -0.02 4.23 14 23 H 0.21 3.03 8.06 -2.91 -0.02 3.01 14 Total: -1.00 -68.95 226.51 2.74 -66.21 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.43 Total: 15.86 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 2.91 Total: -35.67 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -1.41 Total: -58.17 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.09 Total: -32.98 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.34 kcal Atomic # 16 Polarization: 9.54 SS G_CDS: -1.14 Total: 8.40 kcal Total: -68.95 2.74 -66.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619580.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.903 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds