Wall clock time and date at job start Mon Mar 30 2020 03:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30594 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 299.99822 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00237 * 3 2 1 7 7 C 1.40350 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.40172 * 120.00013 * 0.27934 * 7 2 1 10 10 N 1.30495 * 124.93719 * 359.42014 * 9 7 2 11 11 C 1.32883 * 117.98361 * 179.76556 * 10 9 7 12 12 C 1.41951 * 128.68831 * 180.19338 * 11 10 9 13 13 C 1.35833 * 120.58433 * 180.33843 * 12 11 10 14 14 C 1.39060 * 120.93302 * 359.97438 * 13 12 11 15 15 C 1.38095 * 120.06809 * 359.97438 * 14 13 12 16 16 O 1.35956 * 120.01531 * 180.02562 * 15 14 13 17 17 C 1.39804 * 119.97230 * 0.03437 * 15 14 13 18 18 S 1.75854 * 124.93689 * 179.72111 * 9 7 2 19 19 H 0.97005 * 119.99981 * 0.02562 * 1 2 3 20 20 H 1.08010 * 119.70694 * 0.35841 * 12 11 10 21 21 H 1.08003 * 119.53327 * 180.02562 * 13 12 11 22 22 H 1.07996 * 119.96684 * 180.02562 * 14 13 12 23 23 H 0.96702 * 113.99654 * 270.02170 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.6999 1.3464 0.0006 5 1 1.8811 2.3964 -1.2125 6 1 1.8811 2.3964 1.2126 7 6 2.0077 -1.2155 0.0005 8 1 3.0877 -1.2154 0.0001 9 6 1.3068 -2.4294 -0.0048 10 7 0.0067 -2.5417 0.0003 11 6 -0.5135 -3.7644 -0.0108 12 6 -1.8805 -4.1472 -0.0121 13 6 -2.2307 -5.4595 -0.0174 14 6 -1.2626 -6.4577 -0.0223 15 6 0.0770 -6.1224 -0.0222 16 8 1.0227 -7.0992 -0.0275 17 6 0.4604 -4.7779 -0.0166 18 16 2.0518 -4.0223 -0.0119 19 1 -0.4850 0.8401 -0.0004 20 1 -2.6488 -3.3881 -0.0091 21 1 -3.2759 -5.7316 -0.0188 22 1 -1.5586 -7.4963 -0.0269 23 1 1.2969 -7.3858 0.8544 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238726855.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:54 Heat of formation + Delta-G solvation = -26.585328 kcal Electronic energy + Delta-G solvation = -12150.657500 eV Core-core repulsion = 9860.956584 eV Total energy + Delta-G solvation = -2289.700916 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.68784 -38.68332 -36.74106 -35.19090 -31.11046 -30.48674 -28.32972 -24.68818 -23.20401 -22.18816 -19.58686 -19.17837 -17.86034 -17.21423 -16.54288 -16.31134 -15.76379 -15.29938 -14.72901 -14.62930 -13.61685 -13.27288 -13.11621 -12.96503 -12.78023 -12.24681 -12.01536 -11.73582 -11.54417 -11.20741 -10.53811 -9.72511 -9.47230 -8.70551 -8.67063 -6.86586 0.07912 0.44038 1.00533 1.36540 1.39509 1.42799 1.60662 1.95204 2.13717 2.77969 3.27299 3.41621 3.89622 4.30874 4.37622 4.70562 4.77710 4.88680 5.20308 5.43598 5.51099 5.69340 5.80065 6.02439 6.15263 6.43400 6.83493 7.82531 8.10611 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.050361 B = 0.009063 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.854335 B = 3088.617711 C = 3632.101332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.021 3.979 3 Si 1.011 2.989 4 H -0.244 1.244 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.116 0.884 9 C 0.223 3.777 10 N -0.586 5.586 11 C 0.154 3.846 12 C -0.168 4.168 13 C -0.060 4.060 14 C -0.210 4.210 15 C 0.166 3.834 16 O -0.506 6.506 17 C -0.297 4.297 18 S -0.118 6.118 19 H 0.297 0.703 20 H 0.118 0.882 21 H 0.163 0.837 22 H 0.155 0.845 23 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.221 -2.929 1.690 3.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.207 4.207 3 Si 0.828 3.172 4 H -0.167 1.167 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.428 4.428 8 H 0.134 0.866 9 C -0.028 4.028 10 N -0.308 5.308 11 C 0.023 3.977 12 C -0.190 4.190 13 C -0.081 4.081 14 C -0.232 4.232 15 C 0.116 3.884 16 O -0.318 6.318 17 C -0.417 4.417 18 S 0.137 5.863 19 H 0.108 0.892 20 H 0.136 0.864 21 H 0.180 0.820 22 H 0.173 0.827 23 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.363 -2.643 1.097 2.885 hybrid contribution -0.447 0.316 0.454 0.711 sum -0.084 -2.327 1.552 2.798 Atomic orbital electron populations 1.70045 1.09705 1.31360 1.24035 1.27369 0.95943 1.04969 0.92418 0.84724 0.79402 0.73626 0.79435 1.16667 1.18446 1.18325 1.19925 0.96014 0.88410 1.38492 0.86649 1.24274 0.89420 0.94104 0.95007 1.66905 1.09645 1.19874 1.34362 1.20058 0.95686 0.87088 0.94876 1.20482 0.91717 0.97441 1.09350 1.20670 1.00585 0.90541 0.96254 1.21157 0.90031 1.00868 1.11103 1.17748 0.88771 0.83409 0.98442 1.84713 1.58167 1.54164 1.34799 1.24067 0.95470 0.98570 1.23625 1.84053 1.10426 1.07357 1.84514 0.89197 0.86400 0.81970 0.82701 0.73981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.40 11.84 21.89 0.26 -37.14 14 2 C 0.02 0.98 5.50 85.39 0.47 1.45 14 3 Si 1.01 33.85 29.56 68.60 2.03 35.88 14 4 H -0.24 -7.67 7.11 99.48 0.71 -6.96 14 5 H -0.26 -8.36 7.11 99.48 0.71 -7.66 14 6 H -0.26 -8.28 7.11 99.48 0.71 -7.57 14 7 C -0.39 -19.83 9.39 23.25 0.22 -19.62 14 8 H 0.12 5.32 7.85 -2.91 -0.02 5.29 14 9 C 0.22 12.45 7.04 85.36 0.60 13.05 14 10 N -0.59 -34.17 8.59 -186.44 -1.60 -35.78 14 11 C 0.15 8.19 6.94 40.47 0.28 8.47 14 12 C -0.17 -7.43 10.07 22.63 0.23 -7.21 14 13 C -0.06 -2.09 9.93 21.91 0.22 -1.87 14 14 C -0.21 -7.37 9.99 22.43 0.22 -7.15 14 15 C 0.17 6.91 6.72 22.61 0.15 7.07 14 16 O -0.51 -18.32 13.51 -93.05 -1.26 -19.57 14 17 C -0.30 -14.84 6.50 23.22 0.15 -14.68 14 18 S -0.12 -5.91 23.33 -56.49 -1.32 -7.23 14 19 H 0.30 13.30 8.29 -92.70 -0.77 12.53 14 20 H 0.12 5.02 8.06 -2.91 -0.02 5.00 14 21 H 0.16 4.11 8.06 -2.91 -0.02 4.08 14 22 H 0.16 4.22 8.06 -2.91 -0.02 4.20 14 23 H 0.40 10.47 9.06 -74.06 -0.67 9.80 14 Total: -1.00 -66.86 229.60 1.24 -65.62 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.59 Total: 18.71 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 2.54 Total: -20.49 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -1.34 Total: -72.92 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.26 Total: -19.57 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -1.32 Total: -7.23 kcal Total: -66.86 1.24 -65.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238726855.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.035 kcal (2) G-P(sol) polarization free energy of solvation -66.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds