Wall clock time and date at job start Mon Mar 30 2020 03:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86799 * 119.99507 * 2 1 4 4 H 1.48497 * 109.47397 * 269.99629 * 3 2 1 5 5 H 1.48497 * 109.47217 * 30.00073 * 3 2 1 6 6 H 1.48506 * 109.47003 * 149.99969 * 3 2 1 7 7 C 1.40320 * 120.00597 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00401 * 180.02562 * 7 2 1 9 9 C 1.40053 * 119.99880 * 0.02562 * 7 2 1 10 10 N 1.30515 * 124.93760 * 180.02562 * 9 7 2 11 11 C 1.32754 * 118.00451 * 180.02562 * 10 9 7 12 12 C 1.40672 * 113.12133 * 359.97438 * 11 10 9 13 13 C 1.39186 * 120.36248 * 179.97438 * 12 11 10 14 14 C 1.37847 * 120.36711 * 0.02562 * 13 12 11 15 15 C 1.38825 * 120.21763 * 359.97387 * 14 13 12 16 16 C 1.37499 * 120.66148 * 0.02970 * 15 14 13 17 17 O 1.35772 * 119.89271 * 179.97438 * 16 15 14 18 18 S 1.75858 * 124.93410 * 0.02606 * 9 7 2 19 19 H 0.96993 * 120.00311 * 0.02562 * 1 2 3 20 20 H 1.08004 * 119.81456 * 179.97438 * 13 12 11 21 21 H 1.07999 * 119.89053 * 180.02562 * 14 13 12 22 22 H 1.08004 * 119.66791 * 179.74136 * 15 14 13 23 23 H 0.96707 * 114.00172 * 89.99654 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.4876 2.0465 -1.4000 5 1 1.4374 2.6527 0.7000 6 1 3.5377 1.4403 0.7001 7 6 2.0079 -1.2151 -0.0005 8 1 3.0879 -1.2151 -0.0001 9 6 1.3077 -2.4281 -0.0016 10 7 1.8607 -3.6103 -0.0017 11 6 1.0631 -4.6715 -0.0033 12 6 -0.3030 -4.3358 -0.0042 13 6 -1.2728 -5.3342 -0.0064 14 6 -0.9053 -6.6627 -0.0073 15 6 0.4372 -7.0163 -0.0065 16 6 1.4165 -6.0511 -0.0043 17 8 2.7247 -6.4145 -0.0030 18 16 -0.4443 -2.5795 -0.0031 19 1 -0.4850 0.8400 -0.0004 20 1 -2.3191 -5.0664 -0.0066 21 1 -1.6642 -7.4311 -0.0095 22 1 0.7152 -8.0599 -0.0030 23 1 3.1048 -6.5188 -0.8861 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238727038.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:25 Heat of formation + Delta-G solvation = -39.352308 kcal Electronic energy + Delta-G solvation = -12143.514077 eV Core-core repulsion = 9853.259544 eV Total energy + Delta-G solvation = -2290.254533 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.67579 -38.13405 -36.93300 -35.71823 -31.08004 -30.46372 -28.23129 -24.67256 -23.27173 -21.76485 -20.06805 -18.93837 -17.96968 -17.26594 -16.60782 -16.05918 -15.64341 -15.30780 -14.72244 -14.62438 -13.71364 -13.46576 -13.17701 -13.00723 -12.59750 -12.32052 -12.04676 -11.89449 -11.34945 -11.08979 -10.38684 -9.77385 -9.42626 -9.04914 -8.56392 -6.92797 0.06884 0.46682 1.21147 1.33071 1.35174 1.55627 1.67364 1.89954 2.10532 2.69518 3.18562 3.55687 3.83822 4.19200 4.57620 4.66828 4.79783 4.89086 5.16161 5.44573 5.53035 5.66251 5.77719 6.03308 6.20943 6.25592 6.96931 7.68073 7.84811 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.051736 B = 0.009072 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.081905 B = 3085.530471 C = 3614.252089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.022 3.978 3 Si 1.025 2.975 4 H -0.252 1.252 5 H -0.253 1.253 6 H -0.254 1.254 7 C -0.389 4.389 8 H 0.109 0.891 9 C 0.208 3.792 10 N -0.649 5.649 11 C 0.110 3.890 12 C -0.308 4.308 13 C -0.061 4.061 14 C -0.162 4.162 15 C -0.111 4.111 16 C 0.051 3.949 17 O -0.501 6.501 18 S 0.043 5.957 19 H 0.319 0.681 20 H 0.130 0.870 21 H 0.162 0.838 22 H 0.155 0.845 23 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 -1.475 -1.689 3.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.199 4.199 3 Si 0.842 3.158 4 H -0.176 1.176 5 H -0.177 1.177 6 H -0.177 1.177 7 C -0.430 4.430 8 H 0.127 0.873 9 C -0.044 4.044 10 N -0.374 5.374 11 C -0.020 4.020 12 C -0.428 4.428 13 C -0.084 4.084 14 C -0.184 4.184 15 C -0.132 4.132 16 C 0.003 3.997 17 O -0.311 6.311 18 S 0.298 5.702 19 H 0.133 0.867 20 H 0.148 0.852 21 H 0.179 0.821 22 H 0.172 0.828 23 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.580 -0.513 -1.072 2.840 hybrid contribution 0.672 -0.262 -0.491 0.873 sum -1.907 -0.775 -1.563 2.585 Atomic orbital electron populations 1.68616 1.09315 1.33382 1.29844 1.27416 0.95960 1.05942 0.90624 0.84528 0.78541 0.72372 0.80406 1.17583 1.17659 1.17720 1.19673 0.96559 0.88070 1.38715 0.87307 1.24044 0.91484 0.94658 0.94224 1.66664 1.36482 0.97095 1.37127 1.20085 0.89071 0.94337 0.98528 1.24903 0.97831 1.02059 1.18043 1.20485 0.97469 0.91831 0.98573 1.20985 0.95759 0.95115 1.06513 1.21176 0.92291 0.98984 1.00765 1.18319 0.84377 0.87854 1.09161 1.84707 1.22465 1.89962 1.33931 1.85188 1.11558 0.93738 1.79683 0.86717 0.85214 0.82072 0.82754 0.75487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.17 10.60 21.89 0.23 -35.93 14 2 C 0.02 1.01 5.50 85.38 0.47 1.48 14 3 Si 1.03 32.93 29.56 68.60 2.03 34.96 14 4 H -0.25 -7.71 7.11 99.48 0.71 -7.00 14 5 H -0.25 -7.42 7.11 99.48 0.71 -6.71 14 6 H -0.25 -8.11 7.11 99.48 0.71 -7.40 14 7 C -0.39 -20.32 9.45 23.22 0.22 -20.11 14 8 H 0.11 5.50 7.85 -2.91 -0.02 5.47 14 9 C 0.21 11.85 7.09 85.33 0.60 12.46 14 10 N -0.65 -38.01 10.58 -186.13 -1.97 -39.98 14 11 C 0.11 5.91 6.89 40.64 0.28 6.19 14 12 C -0.31 -15.52 6.54 23.09 0.15 -15.36 14 13 C -0.06 -2.47 10.05 22.40 0.23 -2.25 14 14 C -0.16 -5.54 10.04 22.32 0.22 -5.32 14 15 C -0.11 -4.03 9.91 22.24 0.22 -3.81 14 16 C 0.05 2.33 6.78 23.13 0.16 2.48 14 17 O -0.50 -21.06 13.50 -90.99 -1.23 -22.29 14 18 S 0.04 2.25 20.28 -56.49 -1.15 1.11 14 19 H 0.32 12.66 8.29 -92.71 -0.77 11.89 14 20 H 0.13 4.55 8.06 -2.91 -0.02 4.53 14 21 H 0.16 3.97 8.06 -2.91 -0.02 3.95 14 22 H 0.15 4.36 8.06 -2.91 -0.02 4.34 14 23 H 0.39 12.64 9.06 -74.05 -0.67 11.97 14 Total: -1.00 -66.40 227.47 1.06 -65.35 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.59 Total: 21.03 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 2.55 Total: -24.24 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.74 Total: -75.91 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.23 Total: -22.29 kcal Atomic # 14 Polarization: 32.93 SS G_CDS: 2.03 Total: 34.96 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.15 Total: 1.11 kcal Total: -66.40 1.06 -65.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238727038.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.996 kcal (2) G-P(sol) polarization free energy of solvation -66.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds