Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 N 1.46506 * 109.47075 * 59.99940 * 4 2 1 6 6 C 1.36929 * 120.00194 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00111 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00035 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99912 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00122 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47314 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47726 * 120.00041 * 10 8 6 13 13 H 1.48506 * 109.46947 * 239.99604 * 10 8 6 14 14 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 15 15 C 1.38673 * 120.41652 * 299.71717 * 14 2 1 16 16 C 1.38623 * 118.42213 * 179.78144 * 15 14 2 17 17 C 1.38225 * 119.15745 * 0.51520 * 16 15 14 18 18 N 1.31854 * 120.76886 * 359.72907 * 17 16 15 19 19 C 1.31888 * 121.72041 * 359.97438 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 28 28 H 0.96999 * 119.99689 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00284 * 179.97438 * 9 8 6 30 30 H 1.08008 * 120.78804 * 0.02562 * 15 14 2 31 31 H 1.07997 * 120.42155 * 180.22623 * 16 15 14 32 32 H 1.08004 * 119.61779 * 179.74938 * 17 16 15 33 33 H 1.08000 * 119.61599 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8829 -0.4982 -3.6891 7 1 2.5038 -1.3762 -3.7882 8 6 1.4206 0.1565 -4.8225 9 7 0.6635 1.2263 -4.7017 10 14 1.8719 -0.4816 -6.5191 11 1 2.7257 -1.6890 -6.3829 12 1 0.6345 -0.8311 -7.2619 13 1 2.6148 0.5683 -7.2614 14 6 2.0324 -0.7105 1.2305 15 6 1.7075 -0.2409 2.4942 16 6 2.1880 -0.9290 3.5974 17 6 2.9784 -2.0461 3.4026 18 7 3.2714 -2.4612 2.1859 19 6 2.8269 -1.8349 1.1137 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 3.1300 -0.7217 -1.2490 27 1 1.6766 -1.7489 -1.2493 28 1 0.9943 0.7582 -2.3564 29 1 0.3407 1.6840 -5.4937 30 1 1.0913 0.6378 2.6159 31 1 1.9518 -0.5938 4.5965 32 1 3.3602 -2.5855 4.2569 33 1 3.0883 -2.2043 0.1331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258889188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = 36.559303 kcal Electronic energy + Delta-G solvation = -14743.142763 eV Core-core repulsion = 12382.811985 eV Total energy + Delta-G solvation = -2360.330779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.31563 -37.09290 -33.64275 -32.06947 -30.66018 -29.63608 -26.83526 -25.96951 -23.84295 -23.14344 -21.98024 -18.87215 -17.54643 -16.85831 -16.03177 -14.90631 -14.57337 -14.21571 -13.95292 -13.57174 -13.37713 -13.02045 -12.71445 -12.66176 -11.99983 -11.90400 -11.44466 -10.98420 -10.86147 -10.80687 -10.66499 -10.25347 -9.94137 -9.66282 -9.64629 -9.20618 -8.87721 -8.78687 -6.91059 -5.76611 -3.04445 1.24801 1.39909 3.44215 3.50327 3.52262 3.94041 4.53430 4.60438 4.87394 4.92398 5.09471 5.13620 5.37766 5.40661 5.53361 5.61948 5.76915 5.91283 6.01294 6.02175 6.15505 6.26270 6.27373 6.31939 6.54526 6.62920 6.67509 6.75397 6.83007 6.90881 7.71825 8.10378 8.42792 9.54337 10.11455 10.46540 11.46586 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.051367 B = 0.006468 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.971412 B = 4328.246582 C = 4682.161565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.032 4.032 3 C -0.132 4.132 4 C 0.160 3.840 5 N -0.728 5.728 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.906 3.094 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C -0.104 4.104 15 C -0.075 4.075 16 C -0.175 4.175 17 C 0.081 3.919 18 N -0.485 5.485 19 C 0.097 3.903 20 H 0.074 0.926 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.385 0.615 29 H 0.254 0.746 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 -1.903 15.347 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.033 4.033 3 C -0.189 4.189 4 C 0.032 3.968 5 N -0.373 5.373 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C -0.106 4.106 15 C -0.101 4.101 16 C -0.195 4.195 17 C -0.076 4.076 18 N -0.193 5.193 19 C -0.059 4.059 20 H 0.092 0.908 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.220 0.780 29 H 0.064 0.936 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.954 -2.755 15.109 15.481 hybrid contribution -0.507 0.721 -0.780 1.177 sum 1.447 -2.034 14.329 14.544 Atomic orbital electron populations 1.21817 0.93313 1.01912 1.01896 1.19689 0.96168 0.95606 0.91839 1.21816 1.00922 0.94308 1.01898 1.20772 0.96123 0.94388 0.85501 1.42398 1.61351 1.33354 1.00202 1.19286 1.25458 1.08595 0.83528 0.91117 1.24715 1.00521 0.97947 0.97788 1.69660 1.39486 1.20953 1.28243 0.86122 0.77520 0.77894 0.84706 1.20548 1.21906 1.21911 1.20986 0.97612 0.96535 0.95516 1.21438 0.97732 0.99055 0.91875 1.22068 1.00241 0.97637 0.99580 1.22684 0.95599 0.94449 0.94900 1.67723 1.21470 1.31102 0.99047 1.22970 0.93355 0.91843 0.97719 0.90755 0.93541 0.92874 0.93544 0.92878 0.90749 0.96005 0.96000 0.78000 0.93587 0.85091 0.85247 0.83311 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.12 37.16 0.30 -1.80 16 2 C -0.03 -0.52 0.62 -155.66 -0.10 -0.62 16 3 C -0.13 -2.10 8.12 37.15 0.30 -1.80 16 4 C 0.16 3.19 3.82 -4.04 -0.02 3.18 16 5 N -0.73 -18.02 5.00 -59.91 -0.30 -18.32 16 6 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 10 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C -0.10 -1.54 4.76 -104.48 -0.50 -2.03 16 15 C -0.07 -0.94 8.85 -39.28 -0.35 -1.28 16 16 C -0.18 -1.94 10.11 -39.44 -0.40 -2.34 16 17 C 0.08 0.99 11.18 -17.55 -0.20 0.79 16 18 N -0.49 -7.33 10.36 -13.25 -0.14 -7.47 16 19 C 0.10 1.51 10.15 -17.55 -0.18 1.33 16 20 H 0.07 1.34 6.86 -51.93 -0.36 0.99 16 21 H 0.05 0.62 7.47 -51.93 -0.39 0.23 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.62 7.44 -51.93 -0.39 0.23 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.07 1.34 6.86 -51.93 -0.36 0.99 16 26 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16 27 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16 28 H 0.38 9.87 5.36 -40.82 -0.22 9.65 16 29 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.13 1.40 7.26 -52.48 -0.38 1.02 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.16 2.51 5.91 -52.49 -0.31 2.20 16 LS Contribution 271.29 15.07 4.09 4.09 Total: -1.00 -30.62 271.29 -6.44 -37.06 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.42 Total: 6.31 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.37 Total: -11.81 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.29 Total: -53.04 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.62 -6.44 -37.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258889188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.618 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds