Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 N 1.46506 * 109.47075 * 59.99940 * 4 2 1 6 6 C 1.36929 * 120.00194 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00111 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00035 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99912 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00122 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47314 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47726 * 120.00041 * 10 8 6 13 13 H 1.48506 * 109.46947 * 239.99604 * 10 8 6 14 14 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 15 15 C 1.38673 * 120.41652 * 299.71717 * 14 2 1 16 16 C 1.38623 * 118.42213 * 179.78144 * 15 14 2 17 17 C 1.38225 * 119.15745 * 0.51520 * 16 15 14 18 18 N 1.31854 * 120.76886 * 359.72907 * 17 16 15 19 19 C 1.31888 * 121.72041 * 359.97438 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 28 28 H 0.96999 * 119.99689 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00284 * 179.97438 * 9 8 6 30 30 H 1.08008 * 120.78804 * 0.02562 * 15 14 2 31 31 H 1.07997 * 120.42155 * 180.22623 * 16 15 14 32 32 H 1.08004 * 119.61779 * 179.74938 * 17 16 15 33 33 H 1.08000 * 119.61599 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8829 -0.4982 -3.6891 7 1 2.5038 -1.3762 -3.7882 8 6 1.4206 0.1565 -4.8225 9 7 0.6635 1.2263 -4.7017 10 14 1.8719 -0.4816 -6.5191 11 1 2.7257 -1.6890 -6.3829 12 1 0.6345 -0.8311 -7.2619 13 1 2.6148 0.5683 -7.2614 14 6 2.0324 -0.7105 1.2305 15 6 1.7075 -0.2409 2.4942 16 6 2.1880 -0.9290 3.5974 17 6 2.9784 -2.0461 3.4026 18 7 3.2714 -2.4612 2.1859 19 6 2.8269 -1.8349 1.1137 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 3.1300 -0.7217 -1.2490 27 1 1.6766 -1.7489 -1.2493 28 1 0.9943 0.7582 -2.3564 29 1 0.3407 1.6840 -5.4937 30 1 1.0913 0.6378 2.6159 31 1 1.9518 -0.5938 4.5965 32 1 3.3602 -2.5855 4.2569 33 1 3.0883 -2.2043 0.1331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258889188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = 17.271260 kcal Electronic energy + Delta-G solvation = -14743.979156 eV Core-core repulsion = 12382.811985 eV Total energy + Delta-G solvation = -2361.167171 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39832 -38.47758 -35.49748 -33.25296 -32.32365 -30.94428 -28.12691 -27.65148 -25.45065 -24.25671 -23.43310 -20.22495 -19.37000 -18.04795 -17.21234 -16.47951 -16.18218 -15.54810 -15.27265 -15.17108 -14.60602 -14.42110 -14.18179 -13.98075 -13.42888 -13.07692 -12.95400 -12.89510 -12.68345 -12.21038 -12.04451 -12.03712 -11.74026 -11.40666 -10.97592 -10.62539 -10.27531 -9.84051 -8.98321 -7.95167 -5.22728 0.24223 0.41132 1.47616 1.47739 1.58075 2.55946 2.92121 3.38685 3.50867 3.71622 3.76422 4.10758 4.13099 4.13640 4.27008 4.29496 4.40869 4.69339 4.78057 4.86921 4.90632 4.90816 5.07004 5.09628 5.11902 5.22699 5.43349 5.44815 5.46041 5.50641 5.86311 6.27913 7.08880 7.35028 8.09960 8.35556 9.28672 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.051367 B = 0.006468 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.971412 B = 4328.246582 C = 4682.161565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 C -0.126 4.126 4 C 0.160 3.840 5 N -0.737 5.737 6 C -0.245 4.245 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.971 3.029 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.292 1.292 14 C -0.115 4.115 15 C -0.074 4.074 16 C -0.161 4.161 17 C 0.076 3.924 18 N -0.512 5.512 19 C 0.075 3.925 20 H 0.045 0.955 21 H 0.079 0.921 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.378 0.622 29 H 0.252 0.748 30 H 0.156 0.844 31 H 0.171 0.829 32 H 0.181 0.819 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -1.976 17.617 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.022 4.022 3 C -0.184 4.184 4 C 0.034 3.966 5 N -0.381 5.381 6 C -0.377 4.377 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.619 5.619 10 Si 0.800 3.200 11 H -0.193 1.193 12 H -0.220 1.220 13 H -0.220 1.220 14 C -0.118 4.118 15 C -0.100 4.100 16 C -0.180 4.180 17 C -0.081 4.081 18 N -0.220 5.220 19 C -0.081 4.081 20 H 0.065 0.935 21 H 0.098 0.902 22 H 0.066 0.934 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.212 0.788 29 H 0.060 0.940 30 H 0.173 0.827 31 H 0.188 0.812 32 H 0.198 0.802 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.026 -2.853 17.397 17.745 hybrid contribution -0.489 0.695 -1.339 1.586 sum 1.537 -2.159 16.058 16.275 Atomic orbital electron populations 1.21754 0.92931 1.01591 1.02095 1.19497 0.96356 0.95534 0.90851 1.21753 1.00506 0.94020 1.02100 1.20867 0.95651 0.94213 0.85888 1.42551 1.61267 1.33391 1.00853 1.19657 1.24726 1.08348 0.84982 0.91013 1.25496 1.01100 0.98501 1.01335 1.69804 1.40906 1.22261 1.28887 0.85106 0.77130 0.77548 0.80174 1.19339 1.21954 1.21959 1.20763 0.98595 0.96661 0.95745 1.21741 0.97532 0.99716 0.91012 1.22484 0.98262 0.96255 1.01002 1.23321 0.95182 0.94995 0.94631 1.67697 1.22417 1.31920 1.00010 1.22786 0.94803 0.92870 0.97605 0.93550 0.90218 0.93441 0.90215 0.93441 0.93545 0.96529 0.96527 0.78759 0.93957 0.82679 0.81163 0.80213 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 8.12 71.98 0.58 -3.34 16 2 C -0.02 -0.69 0.62 -52.93 -0.03 -0.72 16 3 C -0.13 -3.92 8.12 71.98 0.58 -3.34 16 4 C 0.16 6.60 3.82 86.38 0.33 6.93 16 5 N -0.74 -37.58 5.00 -343.44 -1.72 -39.30 16 6 C -0.25 -13.91 9.99 84.04 0.84 -13.07 16 7 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 8 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 9 N -0.97 -59.19 13.06 21.65 0.28 -58.90 16 10 Si 0.97 46.67 29.55 68.60 2.03 48.69 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 13 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 14 C -0.12 -3.24 4.76 -19.77 -0.09 -3.33 16 15 C -0.07 -1.58 8.85 22.47 0.20 -1.38 16 16 C -0.16 -2.83 10.11 22.36 0.23 -2.61 16 17 C 0.08 1.61 11.18 84.69 0.95 2.56 16 18 N -0.51 -14.85 10.36 -195.84 -2.03 -16.88 16 19 C 0.07 2.31 10.15 84.67 0.86 3.17 16 20 H 0.05 1.69 6.86 -2.39 -0.02 1.68 16 21 H 0.08 1.91 7.47 -2.39 -0.02 1.89 16 22 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 23 H 0.08 1.91 7.44 -2.39 -0.02 1.89 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.69 6.86 -2.39 -0.02 1.68 16 26 H 0.02 0.71 7.53 -2.39 -0.02 0.69 16 27 H 0.02 0.71 7.53 -2.39 -0.02 0.69 16 28 H 0.38 20.13 5.36 -92.71 -0.50 19.63 16 29 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.16 2.53 7.26 -2.91 -0.02 2.51 16 31 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.14 4.72 5.91 -2.91 -0.02 4.70 16 Total: -1.00 -66.91 271.29 4.07 -62.83 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.60 Total: 22.37 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.91 Total: -18.82 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -3.47 Total: -115.08 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -66.91 4.07 -62.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258889188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.104 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds