Wall clock time and date at job start Mon Mar 30 2020 03:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99750 * 2 1 4 4 C 1.46900 * 110.99718 * 123.95335 * 2 1 3 5 5 H 1.08999 * 109.47207 * 288.54648 * 4 2 1 6 6 C 1.53006 * 109.46546 * 168.55316 * 4 2 1 7 7 C 1.50700 * 109.47145 * 67.25330 * 6 4 2 8 8 H 1.08003 * 119.99909 * 5.29552 * 7 6 4 9 9 C 1.37875 * 119.99711 * 185.02444 * 7 6 4 10 10 N 1.31513 * 120.00637 * 0.27353 * 9 7 6 11 11 Si 1.86801 * 119.99687 * 180.27595 * 9 7 6 12 12 H 1.48503 * 109.47349 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47342 * 120.00037 * 11 9 7 14 14 H 1.48498 * 109.47095 * 239.99738 * 11 9 7 15 15 C 1.50697 * 109.47070 * 48.55614 * 4 2 1 16 16 C 1.38669 * 120.41445 * 227.28222 * 15 4 2 17 17 C 1.38633 * 118.41867 * 180.02562 * 16 15 4 18 18 C 1.38223 * 119.16264 * 0.02562 * 17 16 15 19 19 N 1.31855 * 120.76172 * 359.97438 * 18 17 16 20 20 C 1.31887 * 121.72518 * 359.71459 * 19 18 17 21 21 H 1.09001 * 109.46984 * 299.64063 * 1 2 3 22 22 H 1.09000 * 109.47009 * 59.64403 * 1 2 3 23 23 H 1.08998 * 109.47029 * 179.64398 * 1 2 3 24 24 H 1.09001 * 109.47238 * 198.78362 * 3 2 1 25 25 H 1.08998 * 109.47258 * 318.79196 * 3 2 1 26 26 H 1.09002 * 109.47186 * 78.78626 * 3 2 1 27 27 H 1.08997 * 109.47547 * 307.25039 * 6 4 2 28 28 H 1.09002 * 109.46667 * 187.25139 * 6 4 2 29 29 H 0.96994 * 120.00369 * 180.02562 * 10 9 7 30 30 H 1.07998 * 120.79681 * 359.97438 * 16 15 4 31 31 H 1.08003 * 120.41658 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.61954 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.61392 * 180.31076 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.8204 -0.2127 2.0603 6 6 3.4981 -0.9864 0.9523 7 6 4.2162 0.3345 1.0567 8 1 3.6690 1.2271 1.3217 9 6 5.5727 0.4022 0.8194 10 7 6.2390 -0.6847 0.4968 11 14 6.4641 2.0381 0.9564 12 1 5.4955 3.1001 1.3296 13 1 7.5188 1.9415 1.9973 14 1 7.0868 2.3734 -0.3494 15 6 1.2975 -2.0995 1.2113 16 6 0.7986 -2.5651 2.4185 17 6 0.1644 -3.7976 2.4390 18 6 0.0516 -4.5167 1.2639 19 7 0.5382 -4.0426 0.1338 20 6 1.1421 -2.8716 0.0759 21 1 -0.3633 0.5082 0.8932 22 1 -0.3633 0.5194 -0.8868 23 1 -0.3633 -1.0276 -0.0064 24 1 3.0339 1.3620 -0.3309 25 1 1.4038 1.9877 -0.6770 26 1 1.9390 1.7823 1.0081 27 1 3.6830 -1.4239 -0.0287 28 1 3.8644 -1.6612 1.7260 29 1 7.1934 -0.6370 0.3302 30 1 0.9024 -1.9817 3.3215 31 1 -0.2365 -4.1910 3.3614 32 1 -0.4407 -5.4780 1.2715 33 1 1.5236 -2.5140 -0.8691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259380401.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:45 Heat of formation + Delta-G solvation = 45.089298 kcal Electronic energy + Delta-G solvation = -15031.845830 eV Core-core repulsion = 12671.884940 eV Total energy + Delta-G solvation = -2359.960890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98654 -37.19880 -32.93764 -32.34634 -31.27478 -29.30733 -26.75443 -25.41592 -23.21386 -22.51766 -22.15229 -19.54406 -16.87009 -16.45055 -16.06426 -14.94364 -14.59588 -14.28290 -13.91040 -13.77564 -13.32263 -12.70141 -12.57777 -12.28863 -11.89346 -11.69418 -11.32645 -11.13205 -11.01872 -10.64223 -10.55725 -10.34457 -9.72426 -9.32926 -9.07435 -8.88160 -8.38306 -8.37220 -7.58677 -6.02134 -4.01427 1.50519 1.64570 3.28520 3.37037 3.38621 4.18075 4.42435 4.67867 4.82343 5.15042 5.29693 5.32966 5.41106 5.48079 5.70410 5.79443 5.91540 6.00620 6.16000 6.22232 6.28312 6.40104 6.44762 6.70487 6.73259 7.10573 7.12130 7.43713 7.63297 7.81584 7.97282 8.00135 8.34088 8.36986 8.99524 9.57931 11.09030 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036149 B = 0.008332 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.391714 B = 3359.654563 C = 3758.073527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.528 5.528 3 C 0.027 3.973 4 C 0.129 3.871 5 H 0.038 0.962 6 C 0.036 3.964 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.059 3.941 10 N -0.891 5.891 11 Si 0.887 3.113 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.283 1.283 15 C -0.108 4.108 16 C -0.082 4.082 17 C -0.178 4.178 18 C 0.078 3.922 19 N -0.491 5.491 20 C 0.121 3.879 21 H 0.013 0.987 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.038 0.962 26 H 0.020 0.980 27 H 0.035 0.965 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.147 0.853 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.162 -1.659 2.300 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.252 5.252 3 C -0.120 4.120 4 C 0.021 3.979 5 H 0.056 0.944 6 C -0.002 4.002 7 C -0.560 4.560 8 H 0.085 0.915 9 C -0.143 4.143 10 N -0.530 5.530 11 Si 0.715 3.285 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.110 4.110 16 C -0.108 4.108 17 C -0.197 4.197 18 C -0.079 4.079 19 N -0.199 5.199 20 C -0.036 4.036 21 H 0.031 0.969 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.129 0.871 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.165 0.835 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.909 -2.443 1.060 11.230 hybrid contribution 0.395 1.721 1.767 2.498 sum -10.514 -0.722 2.826 10.911 Atomic orbital electron populations 1.22476 0.89850 1.01129 0.99462 1.62012 1.05238 1.14807 1.43108 1.22909 1.03615 0.86840 0.98618 1.20897 0.98015 0.87801 0.91214 0.94366 1.19155 0.85452 0.97372 0.98178 1.21476 0.93078 0.94676 1.46723 0.91509 1.24982 0.97646 0.96156 0.95502 1.69973 1.08284 1.27403 1.47300 0.86623 0.79940 0.84252 0.77723 1.19738 1.21137 1.20954 1.21177 0.97047 0.98812 0.94006 1.21497 0.95591 0.95790 0.97938 1.22000 1.01947 0.96129 0.99672 1.22618 0.97487 0.99419 0.88384 1.67721 1.09623 1.13686 1.28876 1.22739 0.93357 0.88525 0.98947 0.96852 0.92146 0.92146 0.87090 0.94303 0.96163 0.94660 0.96530 0.93036 0.85399 0.85480 0.83541 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.03 60.07 0.54 0.86 16 2 N -0.53 -10.11 4.50 -244.58 -1.10 -11.21 16 3 C 0.03 0.53 8.06 60.06 0.48 1.01 16 4 C 0.13 2.63 1.97 -68.86 -0.14 2.49 16 5 H 0.04 0.79 7.76 -51.93 -0.40 0.39 16 6 C 0.04 0.89 4.53 -27.88 -0.13 0.76 16 7 C -0.52 -13.74 6.58 -34.44 -0.23 -13.96 16 8 H 0.07 1.68 5.04 -52.48 -0.26 1.42 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 11 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C -0.11 -1.97 3.49 -104.49 -0.36 -2.34 16 16 C -0.08 -1.29 9.81 -39.28 -0.39 -1.68 16 17 C -0.18 -2.44 10.11 -39.44 -0.40 -2.84 16 18 C 0.08 1.13 11.18 -17.55 -0.20 0.93 16 19 N -0.49 -8.55 10.36 -13.25 -0.14 -8.69 16 20 C 0.12 2.23 9.08 -17.55 -0.16 2.07 16 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 22 H 0.06 0.87 8.06 -51.93 -0.42 0.46 16 23 H 0.06 0.97 5.71 -51.93 -0.30 0.67 16 24 H 0.11 2.44 5.62 -51.93 -0.29 2.14 16 25 H 0.04 0.64 7.90 -51.93 -0.41 0.23 16 26 H 0.02 0.38 7.03 -51.93 -0.36 0.02 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.02 0.45 8.13 -51.93 -0.42 0.02 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.13 1.82 8.04 -52.49 -0.42 1.40 16 31 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.16 3.04 7.94 -52.48 -0.42 2.63 16 LS Contribution 270.25 15.07 4.07 4.07 Total: -1.00 -29.16 270.25 -7.05 -36.21 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.54 Total: 0.26 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.06 Total: -11.18 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.50 Total: -45.23 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.16 -7.05 -36.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259380401.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.301 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds