Wall clock time and date at job start Mon Mar 30 2020 03:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99750 * 2 1 4 4 C 1.46900 * 110.99718 * 123.95335 * 2 1 3 5 5 H 1.08999 * 109.47207 * 288.54648 * 4 2 1 6 6 C 1.53006 * 109.46546 * 168.55316 * 4 2 1 7 7 C 1.50700 * 109.47145 * 67.25330 * 6 4 2 8 8 H 1.08003 * 119.99909 * 5.29552 * 7 6 4 9 9 C 1.37875 * 119.99711 * 185.02444 * 7 6 4 10 10 N 1.31513 * 120.00637 * 0.27353 * 9 7 6 11 11 Si 1.86801 * 119.99687 * 180.27595 * 9 7 6 12 12 H 1.48503 * 109.47349 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47342 * 120.00037 * 11 9 7 14 14 H 1.48498 * 109.47095 * 239.99738 * 11 9 7 15 15 C 1.50697 * 109.47070 * 48.55614 * 4 2 1 16 16 C 1.38669 * 120.41445 * 227.28222 * 15 4 2 17 17 C 1.38633 * 118.41867 * 180.02562 * 16 15 4 18 18 C 1.38223 * 119.16264 * 0.02562 * 17 16 15 19 19 N 1.31855 * 120.76172 * 359.97438 * 18 17 16 20 20 C 1.31887 * 121.72518 * 359.71459 * 19 18 17 21 21 H 1.09001 * 109.46984 * 299.64063 * 1 2 3 22 22 H 1.09000 * 109.47009 * 59.64403 * 1 2 3 23 23 H 1.08998 * 109.47029 * 179.64398 * 1 2 3 24 24 H 1.09001 * 109.47238 * 198.78362 * 3 2 1 25 25 H 1.08998 * 109.47258 * 318.79196 * 3 2 1 26 26 H 1.09002 * 109.47186 * 78.78626 * 3 2 1 27 27 H 1.08997 * 109.47547 * 307.25039 * 6 4 2 28 28 H 1.09002 * 109.46667 * 187.25139 * 6 4 2 29 29 H 0.96994 * 120.00369 * 180.02562 * 10 9 7 30 30 H 1.07998 * 120.79681 * 359.97438 * 16 15 4 31 31 H 1.08003 * 120.41658 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.61954 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.61392 * 180.31076 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.8204 -0.2127 2.0603 6 6 3.4981 -0.9864 0.9523 7 6 4.2162 0.3345 1.0567 8 1 3.6690 1.2271 1.3217 9 6 5.5727 0.4022 0.8194 10 7 6.2390 -0.6847 0.4968 11 14 6.4641 2.0381 0.9564 12 1 5.4955 3.1001 1.3296 13 1 7.5188 1.9415 1.9973 14 1 7.0868 2.3734 -0.3494 15 6 1.2975 -2.0995 1.2113 16 6 0.7986 -2.5651 2.4185 17 6 0.1644 -3.7976 2.4390 18 6 0.0516 -4.5167 1.2639 19 7 0.5382 -4.0426 0.1338 20 6 1.1421 -2.8716 0.0759 21 1 -0.3633 0.5082 0.8932 22 1 -0.3633 0.5194 -0.8868 23 1 -0.3633 -1.0276 -0.0064 24 1 3.0339 1.3620 -0.3309 25 1 1.4038 1.9877 -0.6770 26 1 1.9390 1.7823 1.0081 27 1 3.6830 -1.4239 -0.0287 28 1 3.8644 -1.6612 1.7260 29 1 7.1934 -0.6370 0.3302 30 1 0.9024 -1.9817 3.3215 31 1 -0.2365 -4.1910 3.3614 32 1 -0.4407 -5.4780 1.2715 33 1 1.5236 -2.5140 -0.8691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259380401.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:45 Heat of formation + Delta-G solvation = 25.786393 kcal Electronic energy + Delta-G solvation = -15032.682867 eV Core-core repulsion = 12671.884940 eV Total energy + Delta-G solvation = -2360.797927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.30044 -38.70916 -34.94496 -33.71421 -32.58864 -31.08084 -28.22317 -27.13890 -24.50424 -24.05037 -23.79986 -21.10427 -18.66439 -17.88079 -17.42389 -16.53704 -16.36468 -15.75909 -15.43880 -15.05603 -14.69151 -14.26505 -13.99125 -13.89761 -13.39666 -13.25695 -13.01176 -12.91386 -12.72332 -12.31619 -12.25656 -12.05726 -11.42183 -10.93319 -10.62377 -10.50531 -10.32662 -9.73771 -9.09242 -8.13369 -6.18487 0.25577 0.39618 1.41560 1.43081 1.54242 2.43843 2.90888 3.17777 3.24487 3.60163 3.93462 4.02453 4.18187 4.22918 4.39712 4.47839 4.59088 4.65310 4.76204 4.84840 4.95727 4.96821 5.02315 5.22575 5.38392 5.44102 5.49853 5.58236 5.84701 5.86246 6.21902 6.31166 6.44687 6.90738 7.09976 7.44757 8.99012 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036149 B = 0.008332 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.391714 B = 3359.654563 C = 3758.073527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.032 3.968 4 C 0.144 3.856 5 H 0.036 0.964 6 C 0.046 3.954 7 C -0.522 4.522 8 H 0.079 0.921 9 C 0.000 4.000 10 N -0.935 5.935 11 Si 0.956 3.044 12 H -0.257 1.257 13 H -0.285 1.285 14 H -0.283 1.283 15 C -0.129 4.129 16 C -0.087 4.087 17 C -0.162 4.162 18 C 0.078 3.922 19 N -0.511 5.511 20 C 0.107 3.893 21 H 0.023 0.977 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.019 0.981 27 H -0.001 1.001 28 H -0.014 1.014 29 H 0.260 0.740 30 H 0.144 0.856 31 H 0.171 0.829 32 H 0.186 0.814 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.094 -1.288 3.500 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.268 5.268 3 C -0.115 4.115 4 C 0.035 3.965 5 H 0.054 0.946 6 C 0.008 3.992 7 C -0.560 4.560 8 H 0.097 0.903 9 C -0.197 4.197 10 N -0.576 5.576 11 Si 0.781 3.219 12 H -0.180 1.180 13 H -0.211 1.211 14 H -0.209 1.209 15 C -0.131 4.131 16 C -0.113 4.113 17 C -0.181 4.181 18 C -0.079 4.079 19 N -0.220 5.220 20 C -0.050 4.050 21 H 0.042 0.958 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.037 0.963 27 H 0.017 0.983 28 H 0.004 0.996 29 H 0.068 0.932 30 H 0.162 0.838 31 H 0.189 0.811 32 H 0.202 0.798 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.862 -2.054 2.256 13.219 hybrid contribution 0.905 1.496 1.408 2.245 sum -11.957 -0.558 3.664 12.518 Atomic orbital electron populations 1.22441 0.87371 1.01521 1.00736 1.61887 1.07473 1.14681 1.42731 1.22727 1.02282 0.87403 0.99104 1.20503 0.95090 0.89512 0.91406 0.94628 1.18927 0.89250 0.96032 0.94953 1.21869 0.93342 0.95478 1.45299 0.90338 1.25871 0.98764 0.99678 0.95420 1.70125 1.08506 1.29881 1.49112 0.85534 0.78692 0.80182 0.77499 1.18030 1.21078 1.20860 1.20994 0.98777 0.98055 0.95290 1.21789 0.95244 0.96922 0.97366 1.22431 0.99974 0.94617 1.01079 1.23336 0.96190 1.00610 0.87734 1.67714 1.10299 1.13262 1.30754 1.22448 0.94642 0.89467 0.98404 0.95846 0.90342 0.92278 0.90435 0.91360 0.96267 0.98264 0.99578 0.93163 0.83827 0.81141 0.79753 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.03 127.69 1.15 1.99 16 2 N -0.54 -20.79 4.50 -927.72 -4.18 -24.97 16 3 C 0.03 1.22 8.06 127.69 1.03 2.25 16 4 C 0.14 5.93 1.97 44.17 0.09 6.02 16 5 H 0.04 1.47 7.76 -2.39 -0.02 1.46 16 6 C 0.05 2.39 4.53 29.85 0.14 2.53 16 7 C -0.52 -28.18 6.58 25.60 0.17 -28.01 16 8 H 0.08 3.97 5.04 -2.91 -0.01 3.96 16 9 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 10 N -0.94 -56.81 13.29 21.45 0.28 -56.53 16 11 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 15 C -0.13 -4.69 3.49 -19.78 -0.07 -4.76 16 16 C -0.09 -2.58 9.81 22.47 0.22 -2.36 16 17 C -0.16 -3.84 10.11 22.36 0.23 -3.61 16 18 C 0.08 2.03 11.18 84.69 0.95 2.98 16 19 N -0.51 -17.36 10.36 -195.85 -2.03 -19.39 16 20 C 0.11 3.98 9.08 84.67 0.77 4.75 16 21 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 22 H 0.08 2.09 8.06 -2.39 -0.02 2.08 16 23 H 0.06 1.83 5.71 -2.39 -0.01 1.82 16 24 H 0.08 3.44 5.62 -2.39 -0.01 3.42 16 25 H 0.07 2.13 7.90 -2.39 -0.02 2.11 16 26 H 0.02 0.71 7.03 -2.39 -0.02 0.69 16 27 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H -0.01 -0.80 8.13 -2.39 -0.02 -0.82 16 29 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.14 3.74 8.04 -2.91 -0.02 3.71 16 31 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.19 3.31 8.06 -2.91 -0.02 3.28 16 33 H 0.14 5.65 7.94 -2.91 -0.02 5.63 16 Total: -1.00 -65.23 270.25 2.32 -62.91 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.08 Total: 10.30 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 5.13 Total: -17.77 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -5.92 Total: -100.89 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -65.23 2.32 -62.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259380401.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.693 kcal (2) G-P(sol) polarization free energy of solvation -65.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds