Wall clock time and date at job start Mon Mar 30 2020 03:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00023 * 2 1 4 4 C 1.46894 * 111.00274 * 123.95679 * 2 1 3 5 5 H 1.08997 * 109.47036 * 212.42538 * 4 2 1 6 6 C 1.53008 * 109.47069 * 332.41723 * 4 2 1 7 7 C 1.50695 * 109.47017 * 290.98942 * 6 4 2 8 8 H 1.07999 * 120.00225 * 354.86652 * 7 6 4 9 9 C 1.37879 * 119.99860 * 174.87069 * 7 6 4 10 10 N 1.31518 * 120.00142 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00124 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46637 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47118 * 119.99792 * 11 9 7 14 14 H 1.48493 * 109.46773 * 239.99835 * 11 9 7 15 15 C 1.50699 * 109.47507 * 92.41824 * 4 2 1 16 16 C 1.38662 * 120.42008 * 138.53628 * 15 4 2 17 17 C 1.38628 * 118.42106 * 179.97438 * 16 15 4 18 18 C 1.38220 * 119.16468 * 0.02562 * 17 16 15 19 19 N 1.31857 * 120.76130 * 0.02562 * 18 17 16 20 20 C 1.31880 * 121.72456 * 359.97438 * 19 18 17 21 21 H 1.08993 * 109.47288 * 305.37675 * 1 2 3 22 22 H 1.09002 * 109.47133 * 65.38577 * 1 2 3 23 23 H 1.09001 * 109.46834 * 185.37539 * 1 2 3 24 24 H 1.08993 * 109.47707 * 175.26429 * 3 2 1 25 25 H 1.08999 * 109.47145 * 295.27005 * 3 2 1 26 26 H 1.09003 * 109.47172 * 55.26017 * 3 2 1 27 27 H 1.09001 * 109.46817 * 50.98580 * 6 4 2 28 28 H 1.08991 * 109.47353 * 170.98356 * 6 4 2 29 29 H 0.96996 * 119.99932 * 180.02562 * 10 9 7 30 30 H 1.08001 * 120.79160 * 0.02562 * 16 15 4 31 31 H 1.08004 * 120.41654 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.61980 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.61841 * 180.27997 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 2.9355 -0.3247 1.4687 6 6 0.9846 -0.7339 2.2856 7 6 0.9139 0.6601 2.8537 8 1 1.5867 1.4246 2.4942 9 6 -0.0099 0.9595 3.8325 10 7 -0.8295 0.0287 4.2701 11 14 -0.0982 2.6877 4.5363 12 1 0.9238 3.5421 3.8799 13 1 -1.4489 3.2537 4.2909 14 1 0.1609 2.6408 5.9977 15 6 2.2315 -2.1934 0.7158 16 6 3.3710 -2.8678 1.1275 17 6 3.5461 -4.1799 0.7157 18 6 2.5862 -4.7680 -0.0863 19 7 1.5150 -4.0957 -0.4595 20 6 1.3157 -2.8464 -0.0868 21 1 -0.3633 0.5949 0.8379 22 1 -0.3633 0.4280 -0.9343 23 1 -0.3633 -1.0232 0.0963 24 1 3.0817 1.3437 0.0848 25 1 1.7161 1.8678 -0.9293 26 1 1.5789 1.9205 0.8445 27 1 0.0024 -1.0247 1.9131 28 1 1.2978 -1.4284 3.0650 29 1 -1.4796 0.2395 4.9584 30 1 4.1043 -2.3828 1.7547 31 1 4.4216 -4.7356 1.0178 32 1 2.7154 -5.7896 -0.4117 33 1 0.4238 -2.3293 -0.4087 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259380403.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:48 Heat of formation + Delta-G solvation = 24.909399 kcal Electronic energy + Delta-G solvation = -15085.709610 eV Core-core repulsion = 12724.873654 eV Total energy + Delta-G solvation = -2360.835956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.21126 -38.93090 -34.81494 -33.71183 -32.47557 -30.54439 -28.56096 -27.46313 -24.39010 -24.26067 -23.66627 -20.80380 -18.67042 -17.87437 -17.40621 -16.66925 -16.42390 -15.73621 -15.44665 -15.23782 -14.68370 -14.29412 -13.92352 -13.89646 -13.45470 -13.16472 -12.88055 -12.68188 -12.56665 -12.39865 -12.05566 -11.98272 -11.73908 -11.06741 -10.65124 -10.54706 -10.28876 -9.73259 -9.01133 -8.20485 -6.29333 0.33429 0.45868 1.36339 1.38678 1.49218 2.37716 2.96239 3.11986 3.31376 3.66001 4.04179 4.05289 4.21844 4.27636 4.41218 4.50122 4.73046 4.78927 4.82041 4.83490 4.96373 5.07059 5.12559 5.27135 5.31622 5.40740 5.51418 5.56959 5.77902 5.90930 6.17654 6.24832 6.33918 6.84305 7.14437 7.38007 8.90684 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036314 B = 0.008342 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.869547 B = 3355.569079 C = 3608.637162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.529 5.529 3 C 0.022 3.978 4 C 0.131 3.869 5 H 0.073 0.927 6 C 0.014 3.986 7 C -0.524 4.524 8 H 0.069 0.931 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.953 3.047 12 H -0.260 1.260 13 H -0.282 1.282 14 H -0.283 1.283 15 C -0.117 4.117 16 C -0.089 4.089 17 C -0.163 4.163 18 C 0.073 3.927 19 N -0.513 5.513 20 C 0.091 3.909 21 H 0.032 0.968 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.014 0.986 28 H -0.019 1.019 29 H 0.261 0.739 30 H 0.145 0.855 31 H 0.169 0.831 32 H 0.183 0.817 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.910 -3.199 -7.361 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.252 5.252 3 C -0.126 4.126 4 C 0.022 3.978 5 H 0.091 0.909 6 C -0.024 4.024 7 C -0.561 4.561 8 H 0.087 0.913 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.779 3.221 12 H -0.184 1.184 13 H -0.208 1.208 14 H -0.209 1.209 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.183 4.183 18 C -0.084 4.084 19 N -0.222 5.222 20 C -0.065 4.065 21 H 0.051 0.949 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.033 0.967 28 H 0.000 1.000 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.187 0.813 32 H 0.200 0.800 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.310 -3.847 -8.221 11.654 hybrid contribution -0.178 1.594 2.078 2.625 sum 7.133 -2.254 -6.143 9.679 Atomic orbital electron populations 1.22483 0.88142 1.01041 1.00722 1.62388 1.08029 1.14147 1.40646 1.22532 0.99923 0.88939 1.01171 1.20551 0.98280 0.89232 0.89721 0.90901 1.19618 0.94442 0.95928 0.92417 1.21603 1.17743 0.96515 1.20282 0.91343 1.25829 0.95451 1.00744 0.97148 1.70107 1.21717 1.34950 1.30183 0.85567 0.78121 0.80272 0.78155 1.18407 1.20773 1.20903 1.21071 0.95818 0.97394 0.97703 1.21767 0.96448 0.95451 0.97847 1.22417 1.01764 0.95123 0.98959 1.23285 0.89330 1.00882 0.94953 1.67681 1.22884 1.08489 1.23121 1.22728 0.98898 0.90324 0.94536 0.94915 0.90890 0.92713 0.91434 0.90534 0.95259 0.96747 1.00026 0.93000 0.83753 0.81312 0.79958 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.93 7.66 127.69 0.98 1.91 16 2 N -0.53 -19.88 4.52 -927.74 -4.19 -24.07 16 3 C 0.02 0.76 9.08 127.69 1.16 1.91 16 4 C 0.13 5.33 2.17 44.17 0.10 5.43 16 5 H 0.07 2.90 7.36 -2.39 -0.02 2.89 16 6 C 0.01 0.69 3.92 29.85 0.12 0.81 16 7 C -0.52 -27.67 6.80 25.60 0.17 -27.50 16 8 H 0.07 3.46 5.51 -2.91 -0.02 3.45 16 9 C 0.01 0.36 5.46 84.65 0.46 0.82 16 10 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 11 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 C -0.12 -4.36 4.95 -19.78 -0.10 -4.46 16 16 C -0.09 -2.74 9.82 22.46 0.22 -2.52 16 17 C -0.16 -4.12 10.11 22.36 0.23 -3.89 16 18 C 0.07 1.99 11.18 84.68 0.95 2.94 16 19 N -0.51 -17.92 10.36 -195.85 -2.03 -19.95 16 20 C 0.09 3.42 10.34 84.67 0.88 4.30 16 21 H 0.03 1.48 5.89 -2.39 -0.01 1.47 16 22 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.05 2.17 4.63 -2.39 -0.01 2.16 16 24 H 0.07 2.07 7.83 -2.39 -0.02 2.05 16 25 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.03 1.12 5.52 -2.39 -0.01 1.10 16 27 H 0.01 0.78 5.70 -2.39 -0.01 0.77 16 28 H -0.02 -1.05 8.12 -2.39 -0.02 -1.07 16 29 H 0.26 14.67 8.31 -92.71 -0.77 13.89 16 30 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.15 5.64 4.99 -2.91 -0.01 5.63 16 Total: -1.00 -63.50 264.83 2.35 -61.14 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.10 Total: 12.89 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 5.16 Total: -20.25 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -5.93 Total: -98.74 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.50 2.35 -61.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259380403.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.054 kcal (2) G-P(sol) polarization free energy of solvation -63.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds