Wall clock time and date at job start Mon Mar 30 2020 03:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99865 * 2 1 4 4 C 1.46895 * 111.00032 * 123.95766 * 2 1 3 5 5 H 1.09007 * 109.46759 * 194.46438 * 4 2 1 6 6 C 1.53003 * 109.47125 * 314.46371 * 4 2 1 7 7 C 1.50691 * 109.47089 * 283.02233 * 6 4 2 8 8 H 1.08003 * 120.00167 * 355.58938 * 7 6 4 9 9 C 1.37881 * 119.99976 * 175.59879 * 7 6 4 10 10 N 1.31517 * 119.99652 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00177 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47202 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47341 * 119.99293 * 11 9 7 14 14 H 1.48494 * 109.47098 * 239.99438 * 11 9 7 15 15 C 1.50697 * 109.47119 * 74.46706 * 4 2 1 16 16 C 1.38226 * 119.61868 * 9.44525 * 15 4 2 17 17 C 1.38627 * 119.16153 * 179.79531 * 16 15 4 18 18 C 1.38679 * 118.41729 * 0.46438 * 17 16 15 19 19 C 1.38183 * 119.16488 * 359.51422 * 18 17 16 20 20 N 1.31855 * 119.61720 * 189.46471 * 15 4 2 21 21 H 1.08997 * 109.47130 * 304.54162 * 1 2 3 22 22 H 1.08999 * 109.47430 * 64.54252 * 1 2 3 23 23 H 1.09001 * 109.47372 * 184.54065 * 1 2 3 24 24 H 1.09002 * 109.47161 * 182.91270 * 3 2 1 25 25 H 1.09001 * 109.47677 * 302.91781 * 3 2 1 26 26 H 1.09003 * 109.47096 * 62.91588 * 3 2 1 27 27 H 1.08996 * 109.46821 * 43.02387 * 6 4 2 28 28 H 1.08999 * 109.46554 * 163.01867 * 6 4 2 29 29 H 0.97005 * 119.99535 * 180.02562 * 10 9 7 30 30 H 1.08001 * 120.42115 * 0.04088 * 16 15 4 31 31 H 1.07993 * 120.79372 * 180.23264 * 17 16 15 32 32 H 1.08000 * 120.41571 * 179.77965 * 18 17 16 33 33 H 1.08001 * 119.61598 * 180.24454 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0547 -0.5433 1.2664 6 6 1.2349 -0.3803 2.4078 7 6 1.7295 0.9539 2.9039 8 1 2.5564 1.4413 2.4088 9 6 1.1266 1.5523 3.9899 10 7 0.1194 0.9589 4.5925 11 14 1.7392 3.2065 4.6043 12 1 2.8741 3.6588 3.7601 13 1 0.6389 4.2010 4.5293 14 1 2.1921 3.0747 6.0124 15 6 1.8202 -2.2396 0.8749 16 6 1.4189 -2.6675 -0.3767 17 6 1.2648 -4.0254 -0.6090 18 6 1.5119 -4.9056 0.4338 19 6 1.9105 -4.4041 1.6582 20 7 2.0512 -3.1057 1.8419 21 1 -0.3633 0.5827 0.8465 22 1 -0.3634 0.4417 -0.9279 23 1 -0.3634 -1.0244 0.0814 24 1 3.0838 1.3429 -0.0522 25 1 1.6043 1.9109 -0.8626 26 1 1.6888 1.8783 0.9150 27 1 0.1695 -0.3138 2.1874 28 1 1.4007 -1.1373 3.1744 29 1 -0.3050 1.3801 5.3563 30 1 1.2316 -1.9532 -1.1648 31 1 0.9561 -4.3891 -1.5779 32 1 1.3985 -5.9699 0.2895 33 1 2.1087 -5.0833 2.4742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259550338.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:42 Heat of formation + Delta-G solvation = 47.553006 kcal Electronic energy + Delta-G solvation = -15100.233312 eV Core-core repulsion = 12740.379256 eV Total energy + Delta-G solvation = -2359.854056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88149 -37.21888 -32.77590 -32.13223 -31.15177 -28.84167 -26.93250 -25.81319 -23.20961 -22.33832 -22.10381 -19.23159 -16.74755 -16.13173 -15.80097 -14.93380 -14.85453 -14.45612 -14.05518 -13.56722 -13.28163 -12.71574 -12.45499 -12.07297 -11.70706 -11.20129 -11.14765 -10.91331 -10.87436 -10.75275 -10.56516 -10.14428 -9.92071 -9.41390 -9.11265 -8.79155 -8.42927 -8.31334 -7.35138 -6.01431 -4.02135 1.59965 1.74354 3.28862 3.37195 3.39820 4.29335 4.43841 4.52294 5.11965 5.16674 5.28404 5.34593 5.52133 5.69584 5.87741 5.96997 6.16983 6.21714 6.28468 6.43390 6.44297 6.54563 6.61510 6.66272 6.82773 6.99390 7.17772 7.52459 7.64199 7.78744 7.96444 8.06948 8.37329 8.59679 9.02427 9.58812 11.09394 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036298 B = 0.008643 C = 0.007583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.214864 B = 3238.680460 C = 3691.455658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.538 5.538 3 C 0.014 3.986 4 C 0.126 3.874 5 H 0.088 0.912 6 C -0.001 4.001 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.059 3.941 10 N -0.890 5.890 11 Si 0.887 3.113 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.155 3.845 16 C -0.158 4.158 17 C -0.088 4.088 18 C -0.195 4.195 19 C 0.094 3.906 20 N -0.474 5.474 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -6.581 -9.705 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.261 5.261 3 C -0.134 4.134 4 C 0.017 3.983 5 H 0.106 0.894 6 C -0.039 4.039 7 C -0.556 4.556 8 H 0.079 0.921 9 C -0.143 4.143 10 N -0.529 5.529 11 Si 0.715 3.285 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.017 3.983 16 C -0.178 4.178 17 C -0.114 4.114 18 C -0.215 4.215 19 C -0.063 4.063 20 N -0.183 5.183 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.164 0.836 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.714 -6.471 -9.180 11.362 hybrid contribution -0.322 0.823 0.362 0.955 sum 1.392 -5.648 -8.818 10.564 Atomic orbital electron populations 1.22416 0.88647 1.01374 1.00561 1.62247 1.07664 1.14212 1.41982 1.22618 0.99284 0.89377 1.02165 1.20686 1.00434 0.85375 0.91787 0.89409 1.19765 0.95898 0.97039 0.91182 1.21313 1.16553 1.04215 1.13524 0.92117 1.25000 0.95086 0.97608 0.96577 1.69989 1.22833 1.38449 1.21634 0.86609 0.78748 0.84189 0.78923 1.19673 1.21112 1.21014 1.21558 0.91744 0.96451 0.88523 1.22155 1.00639 0.95760 0.99287 1.21547 0.97439 0.93654 0.98778 1.21997 1.03989 1.00392 0.95132 1.22686 0.95673 0.91937 0.96033 1.67467 1.14440 1.02670 1.33688 0.93061 0.92921 0.92541 0.92760 0.93301 0.90860 0.95208 0.94715 0.93097 0.83649 0.85722 0.85775 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 7.72 60.06 0.46 0.80 16 2 N -0.54 -10.24 3.72 -244.59 -0.91 -11.15 16 3 C 0.01 0.25 8.72 60.06 0.52 0.77 16 4 C 0.13 2.71 2.36 -68.87 -0.16 2.55 16 5 H 0.09 1.97 7.75 -51.92 -0.40 1.56 16 6 C 0.00 -0.02 4.16 -27.89 -0.12 -0.13 16 7 C -0.52 -14.10 7.08 -34.44 -0.24 -14.34 16 8 H 0.06 1.60 6.16 -52.48 -0.32 1.27 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 11 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.16 3.09 5.81 -82.59 -0.48 2.61 16 16 C -0.16 -2.65 8.09 -39.44 -0.32 -2.96 16 17 C -0.09 -1.24 10.18 -39.27 -0.40 -1.64 16 18 C -0.20 -2.68 10.11 -39.44 -0.40 -3.08 16 19 C 0.09 1.53 11.18 -17.55 -0.20 1.33 16 20 N -0.47 -9.61 9.44 -9.47 -0.09 -9.70 16 21 H 0.05 1.10 6.43 -51.93 -0.33 0.77 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 1.03 6.43 -51.93 -0.33 0.70 16 24 H 0.05 0.95 8.05 -51.93 -0.42 0.53 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.57 5.09 -51.93 -0.26 1.30 16 27 H 0.03 0.82 5.48 -51.93 -0.28 0.53 16 28 H 0.03 1.00 7.37 -51.93 -0.38 0.62 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.15 2.31 6.47 -52.49 -0.34 1.97 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.15 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 266.16 15.07 4.01 4.01 Total: -1.00 -30.31 266.16 -7.03 -37.34 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.33 Total: 1.48 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.42 Total: -12.54 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.26 Total: -46.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.31 -7.03 -37.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259550338.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.894 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds